Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I24
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    73   6e-14
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    27   5.1  

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 28/61 (45%), Positives = 36/61 (59%)
 Frame = +1

Query: 268 NRQNWEDADXPILCXTCLGDXPYIRMTXXKYGKECKICSRPXTVXRWCPGAXMRLXKXXX 447
           N+Q WED + P +C  CLGD  Y+RMT    G+ECKICS+P T+ RW      +  K   
Sbjct: 10  NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQI 69

Query: 448 C 450
           C
Sbjct: 70  C 70


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 170 ERSVLFDRLSCVESKIISRKD---TPWLHRS 253
           +R+VLFDRLS V+ +++        PWL ++
Sbjct: 33  KRAVLFDRLSGVQKQVVQEGTHFLIPWLQKA 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,867
Number of Sequences: 5004
Number of extensions: 29261
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)