Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I24
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    98   9e-21
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    28   8.5  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    28   8.5  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    28   8.5  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    28   8.5  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    28   8.5  
AF016447-8|AAG24010.1|  189|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 97.9 bits (233), Expect = 9e-21
 Identities = 42/74 (56%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +1

Query: 238 MATSKST-NTYNRQNWEDADXPILCXTCLGDXPYIRMTXXKYGKECKICSRPXTVXRWCP 414
           M+ SKS+ + YNR+NWED+D PILC TCLG+ PY+RM   KYG+ECKIC RP T  RW P
Sbjct: 1   MSMSKSSYSQYNRKNWEDSDFPILCETCLGNNPYMRMMKDKYGRECKICERPFTTFRWQP 60

Query: 415 GAXMRLXKXXXCPT 456
           G   R      C T
Sbjct: 61  GKGARYKNTELCQT 74


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 257 GGGWGQQGGGGQGGWGG 273



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 280 GGGWGQQGGGGQGGWGG 296


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 220 GGGWGQQGGGGQGGWGG 236



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 243 GGGWGQQGGGGQGGWGG 259


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 219 GGGWGQQGGGGQGGWGG 235



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 242 GGGWGQQGGGGQGGWGG 258


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 258 GGGWGQQGGGGQGGWGG 274



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 281 GGGWGQQGGGGQGGWGG 297


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 257 GGGWGQQGGGGQGGWGG 273



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 942 GGGWXEXDGGGXGGGXG 892
           GGGW +  GGG GG  G
Sbjct: 280 GGGWGQQGGGGQGGWGG 296


>AF016447-8|AAG24010.1|  189|Caenorhabditis elegans Hypothetical
           protein C54F6.5 protein.
          Length = 189

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 138 YFCDLVACRNGKEVFCLIG*AALNL 212
           +FCD V CRN K   CL G + L++
Sbjct: 162 WFCDSVTCRNCKISSCLTGDSKLHV 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,162
Number of Sequences: 27780
Number of extensions: 182250
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)