Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I23
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.45 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.45 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.2  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.45
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = -3

Query: 611 GGGGRXPGGXXGGGXGGX---GXXXGGGGGG 528
           G G    GG   G  GG    G   GGGGGG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 25.8 bits (54), Expect = 0.59
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 632 GXXXXGXGGGGRXPGGXXGGGXGGXGXXXG 543
           G    G  GG    G   GGG GG G   G
Sbjct: 28  GGVVTGASGGSIVVGANNGGGGGGLGIASG 57



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 970 GGGGGXGGXGXGXXGGGGGXXXGXG 896
           G  GG    G    GGGGG     G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.45
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 526 PPPPPPPXXXPXPPXPPPXXPPGXRPPPPXPXXXXP 633
           P P P P   P  P       P   PPP  P    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.2 bits (55), Expect = 0.45
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 535 PPPPXXXPXPPXPPPXXPPGXRP 603
           PP P   P PP  PP  PP   P
Sbjct: 39  PPNPSQGP-PPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
 Frame = +3

Query: 888 PXP-PXPXXXPPPPPXXPXPXPPXPPPP 968
           P P P P   P  P     P P   PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +1

Query: 529 PPPPPPXXXPXPPXPPPXXPPGXRPPPPXP 618
           P  P     P P   PP   P   PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +1

Query: 538 PPPXXXPXPPXPPPXXPPGXRPPPPXP 618
           PP    P PP P      G  P P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMP 436


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 526  PPPPPPP 546
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 526  PPPPPPP 546
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 586 PPGXRPPPPXPXXXXP 633
           PP   PPPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 936 PXPXPPXPPP 965
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 937 PXPXPPXPPP 966
           P P PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 525 PPPPXPPXPXP 557
           PP P PP P P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 894 PPXPXXXPPPP 926
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 526 PPPPPPPXXXP 558
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,745
Number of Sequences: 438
Number of extensions: 8541
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)