Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I20
         (1050 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.089
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.12 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.20 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.7 bits (71), Expect = 0.089
 Identities = 18/67 (26%), Positives = 20/67 (29%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXKXTXGAXXXLPPXKKXKXXPPPXXXXX 622
           PPPP         PP   G    S     PP      G+    P  +     PPP     
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371

Query: 623 PXXXPPP 643
               PPP
Sbjct: 372 TGRQPPP 378



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 18/67 (26%), Positives = 20/67 (29%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXKXTXGAXXXLPPXKKXKXXPPPXXXXX 622
           PPPP          PP   G   S     PP  +        LPP  +    PPP     
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370

Query: 623 PXXXPPP 643
                PP
Sbjct: 371 STGRQPP 377



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXK-XTXGAXXXLPPXKKXKXXPPPXXXX 619
           PPPP      G  PPP       S     PP     +  A   L    +    P P    
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422

Query: 620 XPXXXPPPXP 649
            P   PP  P
Sbjct: 423 LPPSAPPSLP 432



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +1

Query: 859 PPPXXXXXPXGAXP-PPXHTTXPPPXXPR 942
           PPP       G+ P PP   + PPP  PR
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = +2

Query: 446 PPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXKXTXGAXXXLPPXKKXKXXP 601
           PPP    GG   PPPP G          PP    + G      P  + +  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPP 493
           PPPP    G G  PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPP 535
           P PP     GG  PPPP  G   +     PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXKXTXGAXXXLPP--XKKXKXXPPPXXX 616
           PPPP     G   PPPP            PP      G     PP   +  +  PPP   
Sbjct: 208 PPPPMHHKPGEHMPPPPM--HHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 265

Query: 617 XXPXXXPPPXP 649
             P    PP P
Sbjct: 266 HEPGEHMPPPP 276



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = +2

Query: 443 PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXKXTXGAXXXLPP--XKKXKXXPPPXXX 616
           PPPP     G   PPPP            PP      G     PP   +  +  PPP   
Sbjct: 273 PPPPMHHEPGEHMPPPPM--HHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMH 330

Query: 617 XXPXXXPPPXP 649
             P    PP P
Sbjct: 331 HEPGEHMPPPP 341


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
 Frame = +2

Query: 443  PPPPXXFFGGGXXPPPPXGGXXFSXXXXXPPXXKXTXGAXXXLPPXKKXKXXPPPXXXXX 622
            PP P    G    P P  G          PP  K + G    +PP       P P     
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAPPVPTPSAGLP 1227

Query: 623  PXXXP----PPXP 649
            P   P    PP P
Sbjct: 1228 PVPVPTAKAPPVP 1240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,041,324
Number of Sequences: 5004
Number of extensions: 27396
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)