Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_I19
(1030 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.009
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.11
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.35
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.4
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 8.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +2
Query: 692 PXPPPXRV---XXPPPPPPXLXXPXXPXPXPPXP 784
P PPP + PPPPPP + P P PP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXP------XXPXPXPPXP 784
P PPP V P P P + P P P PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 28.3 bits (60), Expect = 1.9
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +2
Query: 722 PPPPPPXLXXPXXPXPXP-PXPXXXP 796
PPPPPP + P P P P P P P
Sbjct: 732 PPPPPPAVIVP-TPAPAPIPVPPPAP 756
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXPXPPXPXXXP 796
P PPP + P P P P P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Frame = +2
Query: 692 PXPPPXRVXX----PPPPPPXLXXPXXPXPXPPXPXXXP 796
P PPP V PPPPPP P P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.11
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 722 PPPPPPXLXXPXXPXPXPP 778
PPPPPP P P P PP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 29.9 bits (64), Expect = 0.61
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 722 PPPPPPXLXXPXXPXPXPPXP 784
PPPPPP P P PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.7 bits (66), Expect = 0.35
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXPXPPXP 784
P PPP V PP PP P P PP P
Sbjct: 1707 PPPPPMSVPPPPSAPP---MPAGPPSAPPPP 1734
Score = 30.3 bits (65), Expect = 0.46
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 698 PPPXRVXXPPPPPPXLXXPXXPXPXPPXPXXXP 796
PP PPPPP + P P P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +2
Query: 698 PPPXRVXXPPPPPPXLXXPXXPXPXPPXP 784
PPP PPP P + P PP P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXPXPPXPXXXP 796
P PPP PP P P + P P P P P
Sbjct: 1190 PVPPPSEA--PPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXP--XPPXP 784
P P V PP P P + P P P PP P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP 1124
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXP---XPPXP 784
P PPP PP P P P P P PP P
Sbjct: 1209 PVPPPSTA--PPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXPXPPXPXXXP 796
P P V PP P P P P P P P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 802 GXGXXRGRGGGGXXXGGXGQXGGXGGXXXXPXGGG 698
G G RG GG G GG GG GGG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 802 GXGXXRGRGGGGXXXGGXGQXGGXGGXXXXPXGG 701
G G RGG G G G GG G GG
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = -1
Query: 781 RGGGGXXXGG----XGQXGGXGGXXXXPXGGGXG 692
RGG G GG G GG GG GGG G
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG 41
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 7.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 784 GRGGGGXXXGGXGQXGGXGGXXXXPXGGGXGV 689
G GG G GG GG GG P G G G+
Sbjct: 222 GHGGFGGGPGGF--EGGPGGFGGGPGGFGGGL 251
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPPPXLXXPXXPXPXPPXPXXXP 796
P P R PPP P P P PP P P
Sbjct: 140 PTSAPPRPSIPPPSPASA--PPIPSKAPPIPSSLP 172
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 725 PPPPPXLXXPXXPXPXPP 778
PPPPP P P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(2) = 8.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 722 PPPPPPXLXXP 754
PPPPPP P
Sbjct: 238 PPPPPPPTLPP 248
Score = 21.8 bits (44), Expect(2) = 8.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 698 PPPXRVXXPPPPPP 739
PPP PPPPPP
Sbjct: 189 PPP-----PPPPPP 197
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 692 PXPPPXRVXXPPPPP 736
P PP R PPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 854,646
Number of Sequences: 5004
Number of extensions: 7590
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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