Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I18
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 848 PXPXPPPSPPPXXXP 892
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 833 PPPXXPXPXPPPSPPP 880
           PP   P P PP S  P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 16/61 (26%), Positives = 19/61 (31%)
 Frame = +2

Query: 698 MXWXEPPISSXXLXXPAPXPPXPXLXXXXXXXXXXXXXXXXPXPRPPPXXPXPXPPPSPP 877
           M   + PI +     P+   P P                  P   PPP  P P  PPS  
Sbjct: 1   MTQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPPSQN 59

Query: 878 P 880
           P
Sbjct: 60  P 60



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 830 RPPPXXPXPXPPPSPPPXXXP 892
           R  P  P   PPP  PP   P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 827 PRPPPXXPXPXPPPSPPPXXXP 892
           P  P   P P  PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +2

Query: 827 PRPPPXXPXPXPPPSPPPXXXP 892
           P+ P     P P   PPP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPP 52


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 182 FFCTLVNNENNRMPNKYETVF 244
           +F   +NN NN   NKY+  +
Sbjct: 129 WFQMSINNTNNNNTNKYKDYY 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,770
Number of Sequences: 438
Number of extensions: 6337
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)