Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I16
         (910 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     33   0.41 
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     31   1.7  
05_07_0359 - 29539294-29540832,29542366-29542518                       29   3.9  
11_07_0007 - 27262229-27262638,27263252-27263312                       28   8.9  
09_02_0274 + 6611555-6611615,6612229-6612638                           28   8.9  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -1

Query: 385 GMXVPVRLSPCPFXLSRASPAEAALSLWRSLKSADPMAL 269
           G   P R+SP    L+   PAEAALS  RSL S  P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176


>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 285 ADFNDRHKLSAASAGLALDNXNGHGLSLTGTXIPGFGEQLGVAGKVNL 428
           A  N+R + S AS  +A  + + HG+ + G   P +G     AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220


>05_07_0359 - 29539294-29540832,29542366-29542518
          Length = 563

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 24/85 (28%), Positives = 33/85 (38%)
 Frame = -1

Query: 406 PSCSPKPGMXVPVRLSPCPFXLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 227
           P    KPG   P R +P P   S +S A AA +L   +K           + P+R   + 
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213

Query: 226 APEVPSEFTVKLPACLXARVGTCLP 152
            P  P +     P  L A+ G   P
Sbjct: 214 GPGRPRKNAAATPLRLGAKRGPGRP 238


>11_07_0007 - 27262229-27262638,27263252-27263312
          Length = 156

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +3

Query: 198 TVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNXNGHGLSLTGT 377
           T ++D    A+ KV  +G+DK+ ++ IG    +DR         LA    +GHG    G 
Sbjct: 17  TCHADSQGLASAKV--SGSDKDDINIIGRGGGHDRGGHGGGGGRLA---GHGHG----GG 67

Query: 378 XIPGFGEQLGV 410
            IPG G+  G+
Sbjct: 68  GIPGGGQSGGI 78


>09_02_0274 + 6611555-6611615,6612229-6612638
          Length = 156

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +3

Query: 198 TVNSDGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNXNGHGLSLTGT 377
           T ++D    A+ KV  +G+DK+ ++ IG    +DR         LA    +GHG    G 
Sbjct: 17  TCHADSQGLASAKV--SGSDKDDINIIGRGGGHDRGGHGGGGGRLA---GHGHG----GG 67

Query: 378 XIPGFGEQLGV 410
            IPG G+  G+
Sbjct: 68  GIPGGGQSGGI 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,935
Number of Sequences: 37544
Number of extensions: 261301
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)