Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I15
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   108   9e-25
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   108   1e-24
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   3.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.3  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    26   8.4  

>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  108 bits (260), Expect = 9e-25
 Identities = 59/105 (56%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
 Frame = +1

Query: 169 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 339
           T SL     + E   IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRF
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60

Query: 340 RKAQCPIVERLTNSLMMHGRNXGXKLMAVRIVKHAFEIIHLLLEK 474
           RKA+C IVERLTNSLMM+GRN G KL+A RIVKHAFEII LL ++
Sbjct: 61  RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQ 105



 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +3

Query: 456 SLVTGENPLQVLVTALSXLDPVK--IRLGSVVRVQFVVKPLMFHPWRRVNQAIWLLCXGA 629
           +L+T +NPLQVLV A++   P +   R+GS   V+   + +   P RRVNQA+ L+  GA
Sbjct: 100 ALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR--QAVDVSPLRRVNQALALITIGA 157

Query: 630 REAAFXXIKXXAXCVAXELXXAA*G 704
           REAAF  +K  + C+A E+  AA G
Sbjct: 158 REAAFRNVKSISECLAEEIINAAKG 182



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = +2

Query: 494 DCIIXSGPREDSTRIGRAGXVRRQAVDVSPL 586
           D +   GPREDSTRIG AG VRRQAVDVSPL
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSPL 143


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  108 bits (259), Expect = 1e-24
 Identities = 55/90 (61%), Positives = 69/90 (76%)
 Frame = +1

Query: 205 IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSL 384
           IKLF ++    V+V D+SL DYI++     + LPH+AGR+  KRFRKA+C IVERLTNSL
Sbjct: 18  IKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRFRKARCFIVERLTNSL 75

Query: 385 MMHGRNXGXKLMAVRIVKHAFEIIHLLLEK 474
           MM+GRN G KL+A RIVKHAFEII LL ++
Sbjct: 76  MMNGRNNGKKLLATRIVKHAFEIIALLTDQ 105



 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +3

Query: 456 SLVTGENPLQVLVTALSXLDPVK--IRLGSVVRVQFVVKPLMFHPWRRVNQAIWLLCXGA 629
           +L+T +NPLQVLV A++   P +   R+GS   V+   + +   P RRVNQA+ L+  GA
Sbjct: 100 ALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRR--QAVDVSPLRRVNQALALITIGA 157

Query: 630 REAAFXXIKXXAXCVAXELXXAA*G 704
           REAAF  +K  + C+A E+  AA G
Sbjct: 158 REAAFRNVKSISECLAEEIINAAKG 182



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 24/31 (77%), Positives = 25/31 (80%)
 Frame = +2

Query: 494 DCIIXSGPREDSTRIGRAGXVRRQAVDVSPL 586
           D +   GPREDSTRIG AG VRRQAVDVSPL
Sbjct: 113 DAVAACGPREDSTRIGSAGTVRRQAVDVSPL 143


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 184 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 327
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  P    R A
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 456  SLVTGENPLQVLVTALSXLDPVKIRL 533
            SL   E P Q++VT    LDP+++ L
Sbjct: 1875 SLPVEEQPRQIIVTRKGMLDPLEVHL 1900


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 465 TGENPLQVLVTALSXLDPVKIRLGSVVRVQFVVK-PLMFHPWRRVNQAI-WLL 617
           TGENP+ VL  A++ + P+ ++L S  R    V+ P+     +R   A+ W+L
Sbjct: 157 TGENPIDVLKQAIAEISPL-MKLVSAKRFNKSVEFPMPLKERQRRRIALQWIL 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,773
Number of Sequences: 5004
Number of extensions: 49015
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)