Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I12
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.7  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   1.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.1  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   8.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   8.9  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +1

Query: 571  PLPASPAXLHXRTPXPLTHPRXVXPXXPPSXPPXPLXLPXXXP 699
            P  A+P  +   TP P   P  V P  PPS PP P   P   P
Sbjct: 1694 PQSAAPPQMSAPTPPP--PPMSVPP--PPSAPPMPAGPPSAPP 1732


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +1

Query: 604 RTPXPLTHPRXVXPXXPPSXPPXP 675
           RT    TH R   P  PPS PP P
Sbjct: 49  RTSTDTTHSRHRYPETPPSLPPPP 72


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 571 PLPASPAXLHXRTPXPLTHPRXVXPXXPPSXPPXPL 678
           P PA PA      P   + P  V P  PP  PP PL
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPM-PPKVPPPPL 206


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 78  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 176
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -1

Query: 698 GXXXGXCRGXGGXEGGWXGXTXRGWVSGXGVRX*RXAGDAGRG 570
           G   G   G GG  GG  G    G     G R  R     GRG
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,796
Number of Sequences: 5004
Number of extensions: 23257
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)