Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_I09
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    75   1e-14
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    73   7e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    68   2e-12
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.29 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.3  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/65 (52%), Positives = 49/65 (75%)
 Frame = +3

Query: 135 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLLAKALEGINVRDLIT 314
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  + AKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 315 NIGSG 329
           NIGSG
Sbjct: 61  NIGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.5 bits (170), Expect = 7e-14
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = +3

Query: 135 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLLAKALEGINVRDLIT 314
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  + AKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 315 NIGS 326
           NIGS
Sbjct: 61  NIGS 64


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 68.1 bits (159), Expect = 2e-12
 Identities = 30/64 (46%), Positives = 47/64 (73%)
 Frame = +3

Query: 135 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLLAKALEGINVRDLIT 314
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  + AKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 315 NIGS 326
           NIGS
Sbjct: 61  NIGS 64


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 20/77 (25%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
 Frame = +3

Query: 609 PRIPLXEGXXXPPLXPPPAXXGPPPXXMXXXPAXSXTXXPXRXXXTPXXXXXPXXTTXXX 788
           P  P  +    PP   PP    PPP      P  S           P     P  +    
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187

Query: 789 P--PSXXPPXPXXXXXP 833
           P  PS  PP P     P
Sbjct: 188 PSLPSAVPPMPPKVPPP 204


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 28/115 (24%), Positives = 33/115 (28%), Gaps = 1/115 (0%)
 Frame = +2

Query: 545 NKXLPXPXPXXPPXXXXXXSRAPDPPXXGXXXPPPXTXPXXXXXXPXXNXXXTRXLXXXX 724
           N  LP P P  PP      S  P PP      PPP                 +R +    
Sbjct: 333 NSSLPPPPP--PPRSNAAGS-IPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389

Query: 725 TPSXXXXPLXXXXTXXYXXPLXSLSXSPXPXXXXXXXXXPXXPXP-PPXXPPPXP 886
            P     P     +     PL + S +  P         P  P   PP  PP  P
Sbjct: 390 AP----PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 117 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLLAKALE 287
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 288 GINVRDLIT 314
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 609 PRIPLXEGXXXPPLXPPPAXXGPPP 683
           P  P+  G   PP  P  A  GPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/37 (35%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
 Frame = +2

Query: 557 PXPXPXXPPXXXXXXSRAPDPPXX--GXXXPPPXTXP 661
           P P P  PP         P PP    G   PPP   P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,101
Number of Sequences: 5004
Number of extensions: 36153
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)