Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_I09
(891 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 103 2e-22
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 99 2e-21
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 1.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 1.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.6
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 2.6
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 2.6
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.4
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 3.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.4
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.4
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.4
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 4.5
U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical pr... 29 4.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 5.9
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 5.9
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 5.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.8
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 25 8.1
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 103 bits (247), Expect = 2e-22
Identities = 46/66 (69%), Positives = 58/66 (87%)
Frame = +3
Query: 132 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLLAKALEGINVRDLI 311
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGL AKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 312 TNIGSG 329
T++ SG
Sbjct: 61 TSVSSG 66
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 99 bits (238), Expect = 2e-21
Identities = 45/66 (68%), Positives = 57/66 (86%)
Frame = +3
Query: 132 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLLAKALEGINVRDLI 311
M S ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGL AKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 312 TNIGSG 329
T++ SG
Sbjct: 61 TSVSSG 66
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Frame = +1
Query: 640 PPP*XXPXXXXXXPXPKXXXHPXXXXPRXPXAXXXPPXXLXXXPLXXXXXLPLXFPXXRX 819
PPP P P P +P P PP + P +P
Sbjct: 67 PPPAPYPQHAVPAPAPPLASYPQNAVP----VPAPPPAPYPQHAVPAPAPPPAPYPQHAV 122
Query: 820 XXXXXXPXXXPXPPPPXX-PPXPP 888
P PPPP PP PP
Sbjct: 123 PAPAPYQQQPPPPPPPPHYPPPPP 146
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/108 (23%), Positives = 27/108 (25%)
Frame = +2
Query: 563 PXPXXPPXXXXXXSRAPDPPXXGXXXPPPXTXPXXXXXXPXXNXXXTRXLXXXXTPSXXX 742
P P P R P PP G PPP P P + PS
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP-----GMPGMPPPPPPSRFG 326
Query: 743 XPLXXXXTXXYXXPLXSLSXSPXPXXXXXXXXXPXXPXPPPXXPPPXP 886
P + P P P PPP PP P
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 374
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/87 (25%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPAXXGPP-PXXMXXXPAXSXTXXPXR 734
P PP P R P G P PPP+ GPP M P
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 347
Query: 735 XXXTPXXXXXPXXTTXXXPPSXXPPXP 815
P PP PP P
Sbjct: 348 PPPPPPRYPSAGPGMYPPPPPSRPPAP 374
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +3
Query: 642 PPLXPPPAXXGPPPXXMXXXPAXS-XTXXPXRXXXTPXXXXXPXXTTXXXP--PSXXPPX 812
PP+ PPP P P M P + P P P T P P PP
Sbjct: 261 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Query: 813 PXXXXXP 833
P P
Sbjct: 321 PPSRFGP 327
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 1.9
Identities = 25/108 (23%), Positives = 27/108 (25%)
Frame = +2
Query: 563 PXPXXPPXXXXXXSRAPDPPXXGXXXPPPXTXPXXXXXXPXXNXXXTRXLXXXXTPSXXX 742
P P P R P PP G PPP P P + PS
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP-----GMPGMPPPPPPSRFG 336
Query: 743 XPLXXXXTXXYXXPLXSLSXSPXPXXXXXXXXXPXXPXPPPXXPPPXP 886
P + P P P PPP PP P
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 384
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/87 (25%), Positives = 23/87 (26%), Gaps = 1/87 (1%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPAXXGPP-PXXMXXXPAXSXTXXPXR 734
P PP P R P G P PPP+ GPP M P
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGM 357
Query: 735 XXXTPXXXXXPXXTTXXXPPSXXPPXP 815
P PP PP P
Sbjct: 358 PPPPPPRYPSAGPGMYPPPPPSRPPAP 384
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Frame = +3
Query: 642 PPLXPPPAXXGPPPXXMXXXPAXS-XTXXPXRXXXTPXXXXXPXXTTXXXP--PSXXPPX 812
PP+ PPP P P M P + P P P T P P PP
Sbjct: 271 PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Query: 813 PXXXXXP 833
P P
Sbjct: 331 PPSRFGP 337
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +1
Query: 727 PXAXXXPPXXLXXXPLXXXXXLPLXFPXXRXXXXXXXPXXXPXPPPPXXPPXPP 888
P PP PL P P P P PPPP PP PP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPP--PPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPAXXGPPP 683
P PP P P I + PP+ PPP PPP
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +1
Query: 727 PXAXXXPPXXLXXXPLXXXXXLPLXFPXXRXXXXXXXPXXXPXPPPPXXPPXPP 888
P PP + P P+ P P P PPP PP PP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPP 80
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.9 bits (64), Expect = 2.6
Identities = 26/117 (22%), Positives = 28/117 (23%), Gaps = 4/117 (3%)
Frame = +2
Query: 548 KXLPXPXPXXPPXXXXXXSRAP----DPPXXGXXXPPPXTXPXXXXXXPXXNXXXTRXLX 715
K P P P P A +P PPP P
Sbjct: 406 KQTPPPTPNAPSHSHQVDQFAEFKLVEPKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTT 465
Query: 716 XXXTPSXXXXPLXXXXTXXYXXPLXSLSXSPXPXXXXXXXXXPXXPXPPPXXPPPXP 886
TP P +S SP P P PPP PPP P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPP 522
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/93 (25%), Positives = 28/93 (30%), Gaps = 1/93 (1%)
Frame = +1
Query: 610 PGSPXXRVXXPPP*XXPXXXXXXPXPKXXXHPXXXXPRXPXAXXXPPXXLXXX-PLXXXX 786
P +P RV PPP P P + P P PP + P
Sbjct: 433 PKTPT-RVAPPPPPSAPPTIKF-PISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPA 490
Query: 787 XLPLXFPXXRXXXXXXXPXXXPXPPPPXXPPXP 885
+ P P P PPPP PP P
Sbjct: 491 EVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.9 bits (64), Expect = 2.6
Identities = 24/86 (27%), Positives = 24/86 (27%), Gaps = 3/86 (3%)
Frame = -2
Query: 887 GGXGGXX--GGGGXGXXXGXXXXXXXRXXGXXRGRXXXXXXGXXXXXX-GGXXXAXGXRG 717
GG GG GGGG G R G G G GG G G
Sbjct: 33 GGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWGGNGGGRGDWGGNG 92
Query: 716 XXXXGXXXHXGWGXXXXXXGXXQGGG 639
G WG G GGG
Sbjct: 93 GGGRGGGGRGDWGGNNNGGGGNWGGG 118
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 838 PXXXPXPPPPXXPPXPP 888
P P PPPP PP PP
Sbjct: 354 PPAPPPPPPPPPPPPPP 370
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/48 (27%), Positives = 15/48 (31%)
Frame = +1
Query: 745 PPXXLXXXPLXXXXXLPLXFPXXRXXXXXXXPXXXPXPPPPXXPPXPP 888
PP + P P+ P P PPPP PP P
Sbjct: 326 PPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTP 373
>Z81030-5|CAB02709.1| 324|Caenorhabditis elegans Hypothetical
protein C01G10.7 protein.
Length = 324
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 120 SKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 257
S KM+ K + S ++ ++D VA+T + + + AAA+D PY
Sbjct: 34 SNQKMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/86 (25%), Positives = 22/86 (25%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPAXXGPPPXXMXXXPAXSXTXXPXRX 737
P P P PR G PP PP PPP P R
Sbjct: 111 PAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRR 170
Query: 738 XXTPXXXXXPXXTTXXXPPSXXPPXP 815
P PPS PP P
Sbjct: 171 PPRTPPSPEP-RNPPRTPPSPIPPPP 195
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPA--XXGPPP 683
P PP P P P G PP PPP GPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPA--XXGPPP 683
P PP P P P G PP PPP GPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 786
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/43 (30%), Positives = 14/43 (32%)
Frame = +2
Query: 554 LPXPXPXXPPXXXXXXSRAPDPPXXGXXXPPPXTXPXXXXXXP 682
+P P P PP P PP PPP P P
Sbjct: 47 MPMPMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMP 89
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPA--XXGPPP 683
P PP P P P G PP PPP GPPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +3
Query: 642 PPLXPPPAXXGPPPXXMXXXPAXSXTXXPXRXXXTPXXXXXPXXTTXXXPPSXXPP 809
PP P PA PPP P+ S P P T PP PP
Sbjct: 459 PPTTPKPA---PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPP 511
>U80836-5|AAB37892.2| 621|Caenorhabditis elegans Hypothetical
protein B0432.7 protein.
Length = 621
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 156 CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLLAKALEGINVRDLITNIGS 326
C ++ L + DDD +T + + +L+ V PG+ A G NV + IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/84 (25%), Positives = 22/84 (26%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPAXXGPPPXXMXXXPAXSXTXXPXRX 737
P PP P P+ P P PP PPP P S P
Sbjct: 576 PPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPP--- 632
Query: 738 XXTPXXXXXPXXTTXXXPPSXXPP 809
P P PP PP
Sbjct: 633 PPPPPPMGLPAVGAGAPPPPPPPP 656
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/84 (25%), Positives = 22/84 (26%)
Frame = +3
Query: 558 PXPPXXXXXXXXXXXPGPRIPLXEGXXXPPLXPPPAXXGPPPXXMXXXPAXSXTXXPXRX 737
P PP P P+ P P PP PPP P S P
Sbjct: 402 PPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPPQSFGMAPISSAAPPP--- 458
Query: 738 XXTPXXXXXPXXTTXXXPPSXXPP 809
P P PP PP
Sbjct: 459 PPPPPPMGLPAVGAGAPPPPPPPP 482
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 806 PXPXXXXXXXXXPXXPXPPPXXPPPXP 886
P P P P PPP PPP P
Sbjct: 126 PNPPRTCCPPPTPAAPPPPPPPPPPAP 152
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 885 GXGGGXXGGGXGXXGXXXXXXXXXGXGEXERE 790
G GGG GGG G G G G +RE
Sbjct: 165 GGGGGCGGGGGGGCGGGGGGGCGGGCGRKKRE 196
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +2
Query: 545 NKXLPXPXPXXPPXXXXXXSRAPDPPXXGXXXPPPXTXPXXXXXXPXXNXXXT 703
N +P P P P P PP PPP P P N T
Sbjct: 557 NVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPPGGLMGPASNDAKT 609
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 25.0 bits (52), Expect(2) = 8.1
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = -1
Query: 891 GXGXGGGXXGGGXGXXGXXXXXXXXXGXGEXEREXXG 781
G G GGG G G G G G G G
Sbjct: 787 GGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGG 823
Score = 21.4 bits (43), Expect(2) = 8.1
Identities = 11/36 (30%), Positives = 13/36 (36%)
Frame = -1
Query: 660 GXVSGGGXXXPXXGGSGARXXXXXXXGGXXGXGXGS 553
G GG GG+GA G G G G+
Sbjct: 834 GGNGNGGGAGDGNGGAGAGNGNGAGAGNGNGAGAGN 869
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,514,166
Number of Sequences: 27780
Number of extensions: 284279
Number of successful extensions: 3057
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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