Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_I02
(975 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.046
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.14
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.33
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 0.75
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.75
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 5.3
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 5.3
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.046
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 629 NPPPXXXPLPXPXXXPPXKXPPXPPP 706
NPPP P P P PP + PP PPP
Sbjct: 8 NPPP---PPPPPGFEPPSQPPPPPPP 30
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.9 bits (69), Expect = 0.14
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -3
Query: 430 PXXXGVXGG--GGXXXFXGXRGGXGGGXGG 347
P G GG GG F G RGG GGG GG
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGG 34
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 702 GGXGGFLXGGXXXGXGXGXXXGGG 631
GG GGF G G G G GGG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGG 39
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 406 GGGXXXFXGXRGGXGGGXGG 347
GGG G RGG GG GG
Sbjct: 37 GGGRGGARGGRGGRGGARGG 56
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -3
Query: 418 GVXGG-GGXXXFXGXRGGXGGGXGG 347
G GG GG G RGG GG GG
Sbjct: 42 GARGGRGGRGGARGGRGGSSGGRGG 66
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = -3
Query: 418 GVXGG--GGXXXFXGXRGGXGGGXGGG 344
G GG GG F G RGG GG GG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGG 42
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.33
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = -3
Query: 466 GGGXXXPXFXLPPXXXGVXGGGGXXXFXGXRGGXGGGXGG 347
GGG P P G G GG G GG GGG GG
Sbjct: 194 GGGSGGPPPG-PGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232
Score = 29.5 bits (63), Expect = 0.75
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -1
Query: 705 GGGXGGFLXGGXXXGXGXGXXXG--GGFXXPPRXWAAG 598
GGG GGF G G G G G GGF P + G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 406 GGGXXXFXGXRGGXGGGXGG 347
GGG F G GG GGG GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 406 GGGXXXFXGXRGGXGGGXGG 347
GGG F G GG GGG GG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGG 260
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 406 GGGXXXFXGXRGGXGGGXGG 347
GGG F G GG GGG GG
Sbjct: 248 GGGLGGFGGGPGGFGGGPGG 267
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -3
Query: 433 PPXXXGVXGGGGXXXFXGXRGGXGGGXGGG 344
PP G GG G G G GG GGG
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 26.2 bits (55), Expect(2) = 0.93
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 705 GGGXGGFLXGGXXXGXGXGXXXGGGF 628
GGG GGF G G G G G G+
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHGGPGW 273
Score = 21.4 bits (43), Expect(2) = 0.93
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -1
Query: 912 GGGGGXGXAXXGXXGXXGXPXXGEXXXXG 826
GG GG G G G G P E G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 0.75
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 418 GVXGGGGXXXFXGXRGGXGGGXGG 347
G G GG F G RGG GG GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGG 156
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = -1
Query: 702 GGXGGFLXGGXXXGXGXGXXXGGGFXXPPRXWAAGGXXXXER 577
GG GGF G G G GGF R GG R
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.75
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 632 PPPXXXPLPXPXXXPPXKXPPXPPP 706
P P P+P P P PP PPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 596 PPAAHXLGGXXNPPPXXXPLPXPXXXPPXKXPPXPPP 706
PP A +GG PPP P PP PP PPP
Sbjct: 752 PPPAPIMGGPPPPPP---PPGVAGAGPP--PPPPPPP 783
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 632 PPPXXXPLPXPXXXPPXKXPPXPPP 706
P P P+P P PP PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Frame = +2
Query: 827 PXXNXSPXXGXPXXPLXP---XXAXPXPPPPP 913
P +P G P P P A P PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 418 GVXGGGGXXXFXGXRGGXGGGXGGG 344
G GG G G RGG GGG G G
Sbjct: 451 GGRGGFGGRGGFGGRGGFGGGRGRG 475
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 822 PXPXXIXPPPXAXPXPXSALXXPP 893
P P + PPP A P P PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Frame = +2
Query: 632 PPPXXXPLPXPXXXPPXKX--PPXPPPXL 712
PPP +P P PP P PPP L
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 409 GGGGXXXFXGXRGGXGGGXGGGXXF 335
GG + G R G GG GGG F
Sbjct: 445 GGPNRQRYRGRRDGRGGNTGGGHSF 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,463
Number of Sequences: 5004
Number of extensions: 26382
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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