Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H18
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.25 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.76 
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    29   1.0  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    28   2.3  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    27   3.1  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   4.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    27   5.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   7.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   9.4  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    26   9.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
 Frame = +3

Query: 654  PXPXPSAXPPPPXPXL--KXLXRPGXCXPLP---XXXPPXXXNXTXXPXLPXXLLTXXTP 818
            P P PS  PP P P +    +  P    P+P      PP     +  P +P        P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP--AAGVP 1189

Query: 819  TXPPPXHXTP 848
              PPP    P
Sbjct: 1190 PVPPPSEAPP 1199



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
 Frame = +3

Query: 654  PXPXPSAXPPPPXPXLKXLXRPGXCXPLPXXXPPXXXNXTXXPXL---PXXLLTXXTPTX 824
            P P P+A  PP  P  +    P     +P   PP        P     P  + T   P  
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239

Query: 825  PPPXHXTPT 851
            P P    P+
Sbjct: 1240 PAPSSEAPS 1248



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
 Frame = +3

Query: 654  PXPXPSAXPPPPXPXLKXLXRPGXCXPLPXXXPPXXXNXTXXPXL---PXXLLTXXTPTX 824
            P P PS  PP P P +     P     +P    P        P     P    +   P  
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 825  PPPXHXTP 848
            PPP    P
Sbjct: 1211 PPPSTAPP 1218



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
 Frame = +3

Query: 654  PXPXPSAXPPPPXPXL--KXLXRPGXC---XPLPXXXPPXXXNXTXXPXLPXXLLTXXTP 818
            P P PS  PP P P +    + +P       P P   PP        P +P   +    P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP---VPSGAP 1140

Query: 819  TXPPPXHXTP 848
              P P    P
Sbjct: 1141 PVPKPSVAAP 1150



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +2

Query: 707  PXPSRLLXPPPXXXTTPAXQPXXXPPPSXXTSXSXNPHGXPPTPLXS 847
            P PS    P P   T P   P     P    S S  P   PP P  S
Sbjct: 1025 PLPSADAPPIPVPSTAPPV-PIPTSTPPVPKSSSGAPSAPPPVPAPS 1070


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 731  PPPXXXTTPAXQPXXXPPPSXXTSXSXNPHGXPPTPL 841
            PP     TP   P   PPP         P   PP PL
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 707  PXPSRLLXPPPXXXTTPAXQPXXXPPPSXXTSXSXNPH 820
            P P   + PPP     PA  P   PPP   +S    P+
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -2

Query: 443 SAGIDQLKGXDN--SPKMPVXDSSRPPK**QNLFSLFFE----PLQNFLNSASIFLGSFF 282
           SA ID L G DN  SP  P  ++S P     + F  F      P  + LN+AS+F+GS  
Sbjct: 274 SAMIDLL-GLDNEPSPAQPQTNTSAPLAFEDDGFGDFQSSAAAPASSTLNNASLFMGS-- 330

Query: 281 TSSDSVAANFSTVFTHTSQSPSRSDRTTXTA 189
            ++ + A N    F     +PS    +   A
Sbjct: 331 QTASTAAKNDDDAFDDFQSAPSAKPASNTAA 361


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 268 LSDDVKKDPKKIEAEFKK 321
           L DD  KDP KIEAE +K
Sbjct: 342 LGDDAIKDPTKIEAEVRK 359


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +1

Query: 301 IEAEFKKFCKGSKNKENRFCYYLGGLEESXTGILGELS---KPLSWSMPADKICEKLXKN 471
           IE +  +    S + +NR+ YY   L E  + ILG +    +P    MP   + E   K+
Sbjct: 84  IEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKS 143


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 265 TLSDDVKKDPKKIEAEFKKFCKGSKNKENRFCYYLGG 375
           T + ++KK+P K+E   ++ C+          YY GG
Sbjct: 285 TSTGELKKEPTKLERASEEICRAISFDVKNDVYYSGG 321


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 731 PPPXXXTTPAXQPXXXPPPSXXTSXSXNPHGXPPTPL 841
           PP    +  A  P   PPPS  T  S  P   PP P+
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSS--PPNSPPRPI 275



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 18/65 (27%), Positives = 21/65 (32%)
 Frame = +3

Query: 654 PXPXPSAXPPPPXPXLKXLXRPGXCXPLPXXXPPXXXNXTXXPXLPXXLLTXXTPTXPPP 833
           P P P + PP   P L     P      P   PP   +    P LP  +     P  PP 
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAP-AAPPLPPSAPIAPPLPAGM--PAAPPLPPA 472

Query: 834 XHXTP 848
               P
Sbjct: 473 APAPP 477


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +3

Query: 681 PPPXPXLKXLXRPGXCXPLPXXXPPXXXNXTXXPXLPXXLLTXXTPTXPPP 833
           PPP P    +  P    P+P   P         P  P  +     P  PPP
Sbjct: 732 PPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +2

Query: 719 RLLXPPPXXXTTPAXQPXXXPPPSXXTSXSXNP-HGXPP 832
           +L  PP     T    P   PPP    S    P HG PP
Sbjct: 6   KLNLPPKRTINTRLSTPVHIPPPINSESTRITPQHGSPP 44


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 707  PXPSRLLXP---PPXXXTTPAXQPXXXPPPSXXTSXSXNPHGXPPTPL 841
            P P  +  P   PP    T A  P    PP+  T+ S NP    P PL
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAG--PPAGATAISGNPGMPAPVPL 1928


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 341 FFEPLQNFLNSASIF----LGSFFTSSDSVAANFSTVFTHTSQSPSRS 210
           +F  + +FL   ++F    L SFFT S  +     + F H + SP+RS
Sbjct: 170 WFVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPNRS 217


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 238 VKTVEKFAATLSDDVKKDPKKIEAEFKKFCKGSK 339
           +KT ++   T  + +    K++EAEF+KF K +K
Sbjct: 75  LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,063
Number of Sequences: 5004
Number of extensions: 47597
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)