Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_H17
(927 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.3
11_03_0027 + 9078792-9079613 31 1.7
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 30 2.3
05_03_0469 + 14439472-14440905 30 2.3
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 4.0
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830... 29 5.2
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 29 5.2
01_07_0108 - 41126074-41127342 29 6.9
05_03_0618 - 16262826-16263097,16263111-16263183 28 9.2
03_02_0950 + 12661008-12662312,12662403-12662576 28 9.2
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 399 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 503
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>11_03_0027 + 9078792-9079613
Length = 273
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 471 NHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDNST*SSITRKVLXMTVSSTV 650
+H+ + +S + K T N+ + FK+ S +S+ SS+T T +ST
Sbjct: 13 HHHSFLSNGIHEGSSPSIILKLT-TNSNSSISFKLFSNTTSSSSSSVT------TTASTP 65
Query: 651 IXPLTPSNTTGTLXPP 698
P+TP+ T + PP
Sbjct: 66 NSPVTPAPVTASSPPP 81
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 30.3 bits (65), Expect = 2.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 545 VGKQQSLLQDHVHRGQQYLKLDN 613
VG S+ +D+VHRG +YL+++N
Sbjct: 252 VGDSISISEDNVHRGVEYLRMEN 274
>05_03_0469 + 14439472-14440905
Length = 477
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 493 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPPRTT 594
+T T+ AR PG+ +PP W+ T+RS PP T
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPPTVT 222
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 467 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 381
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>04_03_0694 +
18781776-18781994,18782475-18782648,18782743-18783057,
18783791-18785569,18786334-18786651,18787052-18787105
Length = 952
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 186 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 356
+LY+ +++ G Y+ A+ S + G +KE K L+E+ T++ +L T G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550
Query: 357 KEIVK 371
+ +
Sbjct: 551 DPMTR 555
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 29.1 bits (62), Expect = 5.2
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Frame = -2
Query: 335 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 189
V E G+P+AV D + D + +FL+ G L N D+ I
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764
Query: 188 LLRQYVISSWCKCGVRSQRTHGEDEGK 108
L + + C+ V S R HG +G+
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQ 790
>01_07_0108 - 41126074-41127342
Length = 422
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 593 VVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFGV-TECN 483
VV+GGH +E N VVF + G +G +FG+ T C+
Sbjct: 379 VVIGGHQMEHNLVVFDEEKQQLG--FSGLLFGLQTTCS 414
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 167 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 81
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 171 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 272
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,551,744
Number of Sequences: 37544
Number of extensions: 452322
Number of successful extensions: 1360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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