Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_H14
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.23
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.9
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 851 PXPPXXRXPPPXGXAPPPPXXXGXPPPP 934
P PP PPP P P PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 851 PXPPXXRXPPPXGXAPPPPXXXGXPPPPP 937
P PP PPP APP P PPPP
Sbjct: 1708 PPPPMSVPPPP--SAPPMPAGPPSAPPPP 1734
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 851 PXPPXXRXPPPXGXAPPPPXXXGXPPPP 934
P P PP PPP PPPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.18
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +2
Query: 851 PXPPXXRXPPPXGXAPPPPXXXGXPPPPP 937
P P PPP PPPP G PPPP
Sbjct: 753 PPAPIMGGPPP---PPPPPGVAGAGPPPP 778
Score = 30.3 bits (65), Expect = 0.41
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 875 PPPXGXAPPPPXXXGXPPPPP 937
P P PP P G PPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPP 766
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +2
Query: 851 PXPPXXRXPPPXGXA---PPPPXXXGXPPPPP 937
P PP PPP G A PPPP PPPPP
Sbjct: 761 PPPP----PPPPGVAGAGPPPP-----PPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.23
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 827 SGKXGXXFPXPPXXRXPPPXGXAPPPPXXXGXPPPPP 937
+G P PP G P PP PPPPP
Sbjct: 329 NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Frame = +2
Query: 839 GXXFPXPPXXRXPPPXGXAPPP---PXXXGXPPPPP 937
G P PP R P G PPP PP PP
Sbjct: 357 GRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 851 PXPPXXRXPPPXGXAPP--PPXXXGXPPPPP 937
P PP PPP G PP PP PPPPP
Sbjct: 9 PPPP----PPPPGFEPPSQPP-----PPPPP 30
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 857 PPXXRXPPPXGXAPPPPXXXGXPPPP 934
PP PPP PP PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Frame = +2
Query: 878 PPXGXAPPPPXXXGXPP--PPP 937
PP PPPP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = -2
Query: 936 GGGGGXPXXXGG-GGAXPXGGGXRXXGGXG 850
GG GG P GG GG GG GG G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHG 224
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 936 GGGGGXPXXXGGGGAXPXGGGXRXXGGXG 850
GG GG P GGG GG GG G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 875 PPPXGXAPPPPXXXGXPPPPP 937
PPP P P G PP PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP 1212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,725
Number of Sequences: 5004
Number of extensions: 15047
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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