Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H13
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.7  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   3.5  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   3.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   6.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.2  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
 Frame = +2

Query: 182 CIATTEILVSSQTLVNRN*MNCHLLQHLMICTLNHLDKNAILLLQ--HSL-XRMDTCFDF 352
           CI + EILV  +T+ N   +    L++ +  T + +D + I+L    HSL   + T FD 
Sbjct: 680 CIGSKEILVPEETIKN---ILFTTLEYFL--TNDWVDNHLIILCASLHSLKAHLPTIFDE 734

Query: 353 SKC--GSDPKI-FVYP-SDGTVSASYRKVLSVIRE 445
           +K      P I F  P  DG V+A +  + S+++E
Sbjct: 735 NKSLYSLLPVILFSKPEDDGHVAAHFESIFSLLKE 769


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = +1

Query: 193 YGNTSFKSDTCK-----SKLNELPSFATLDDLHLKPSRQKRN 303
           Y N  + SD        S L++LP     DDL L P +++RN
Sbjct: 158 YNNYDYTSDPSSPNYISSSLDQLPHLDDEDDLQLTPIKEERN 199


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 465 SLVTYLDSLITDNTFLYEALTVPSL--GYTKIFGSLPHLEKSK 343
           S +TY   ++ D+ F    L V     G T +FG+L HLE  K
Sbjct: 88  STITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFGALKHLEAKK 130


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 172 AFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASAT--QPXSYGY 339
           AFL++  YGN+SF     K  LN+L    + ++L  +   +    A+ T   P  YGY
Sbjct: 22  AFLVHQIYGNSSF----TKISLNQLEGRDSQEELQRRQEIRYYGRAAETGGTPTYYGY 75


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 154 LLFMSCAFLLYCYYGNTSFKSDTC 225
           LL+++CAFL Y   GN +F+S  C
Sbjct: 261 LLWLTCAFLSYMAQGN-AFRSLVC 283


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 130 MQAKRRYLLLFMSCAFLLYCYYGN-TSFKSDT 222
           +Q +  YL++ ++C +LL CY     +  SDT
Sbjct: 282 IQCQALYLIIRLTCLYLLSCYESEILNLSSDT 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,008
Number of Sequences: 5004
Number of extensions: 64020
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)