Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H13
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...    65   7e-11
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...    65   7e-11
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...    65   7e-11

>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
 Frame = +2

Query: 332 MDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPA 496
           M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T DPNEAC+F+  
Sbjct: 32  MSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFLLG 91

Query: 497 IDTLDAD 517
           IDT D D
Sbjct: 92  IDTTDRD 98



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 525 SSEHVSDVASRLSRLP--YWRNGRXHLIFNLYAGTWPDYAEDSXGFDPREAILAXAXCXR 698
           S  +V +V   +  L    W NGR HLIFN Y GT+PDY + +  FD  EA++A A    
Sbjct: 101 SQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGTFPDYDDHNLNFDTGEAMIARASSSE 160

Query: 699 N 701
           N
Sbjct: 161 N 161


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
 Frame = +2

Query: 332 MDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPA 496
           M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T DPNEAC+F+  
Sbjct: 28  MSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFLLG 87

Query: 497 IDTLDAD 517
           IDT D D
Sbjct: 88  IDTTDRD 94



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 525 SSEHVSDVASRLSRLP--YWRNGRXHLIFNLYAGTWPDYAEDSXGFDPREAILAXAXCXR 698
           S  +V +V   +  L    W NGR HLIFN Y GT+PDY + +  FD  EA++A A    
Sbjct: 97  SQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGTFPDYDDHNLNFDTGEAMIARASSSE 156

Query: 699 N 701
           N
Sbjct: 157 N 157


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
 Frame = +2

Query: 332 MDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPA 496
           M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T DPNEAC+F+  
Sbjct: 32  MSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFLLG 91

Query: 497 IDTLDAD 517
           IDT D D
Sbjct: 92  IDTTDRD 98



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +3

Query: 525 SSEHVSDVASRLSRLP--YWRNGRXHLIFNLYAGTWPDYAEDSXGFDPREAILAXAXCXR 698
           S  +V +V   +  L    W NGR HLIFN Y GT+PDY + +  FD  EA++A A    
Sbjct: 101 SQNYVKNVNDYIESLDPSVWNNGRNHLIFNFYHGTFPDYDDHNLNFDTGEAMIARASSSE 160

Query: 699 N 701
           N
Sbjct: 161 N 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,420,290
Number of Sequences: 27780
Number of extensions: 371395
Number of successful extensions: 849
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)