Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_H12
(964 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.060
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.24
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.24
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.3
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 27 3.0
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.9
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 5.2
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 27 5.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 26 6.9
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.1 bits (72), Expect = 0.060
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 851 RGGGXGGGXXGGGXGGGGXGXRGG 780
RGGG GG G G GG G RGG
Sbjct: 36 RGGGRGGARGGRGGRGGARGGRGG 59
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -3
Query: 845 GGXGGGXXGGGXGG--GGXGXRGG 780
GG GG GGG GG GG G RGG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGG 52
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 845 GGXGGGXXG-GGXGGGGXGXRGGG 777
GG GG G GG GGG G RGGG
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGG 39
Score = 30.7 bits (66), Expect = 0.32
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -3
Query: 851 RGGGXGG-GXXGGGXGGGGXGXRGG 780
RGG GG G GGG GG G RGG
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGG 42
Score = 30.3 bits (65), Expect = 0.42
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 845 GGXGGGXXGGGXGGGGXGXRGG 780
GG GGG GG GGG G RGG
Sbjct: 26 GGFGGGR-GGARGGGRGGARGG 46
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 851 RGGGXGGGXXGGGXGGGGXGXRGGG 777
RGG GGG G G GG G GG
Sbjct: 32 RGGARGGGRGGARGGRGGRGGARGG 56
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -2
Query: 849 GGGEXGGXXGGGXGGGREXGXGGGXG 772
G G GG GG GGGR GG G
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 849 GGGEXGGXXGGGXGGGREXGXGGGXG 772
GGG G G G GG G GG G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSG 62
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 845 GGXGGGXXGGGXGGGGXGXRGGG 777
GG GG G G GG G GGG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGG 31
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 851 RGGGXGG-GXXGGGXGG--GGXGXRGG 780
RGG GG G GG GG G G RGG
Sbjct: 40 RGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 845 GGXGGGXXG-GGXGGGGXGXRGGGXV 771
GG GG G GG GG G +GG V
Sbjct: 48 GGRGGARGGRGGSSGGRGGAKGGAKV 73
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 851 RGGGXGGGXXGGGXGGGGXGXRGG 780
RGG GG G GG G RGG
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGG 34
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.24
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRGGG 777
GGG GG G G GGG G GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 30.3 bits (65), Expect = 0.42
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRGGG 777
GGG GG G G GGG G GGG
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 29.9 bits (64), Expect = 0.56
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRGG 780
GGG GG G G GGG G GG
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHGG 270
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 845 GGXGGGXXGGGXGGGGXGXRGGG 777
GG GG G G GGG G GGG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGG 257
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 846 GGEXGGXXGGGXG-GGREXGXGGGXG 772
GG GG GG G GG G GGG G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLG 252
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 846 GGEXGGXXGG-GXGGGREXGXGGGXG 772
GG GG GG G GG G GGG G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 852 EGGGEXGGXXGGGXGGGREXGXGGGXG 772
EGG G GG GGG G GGG G
Sbjct: 234 EGGPGGFGGGPGGFGGGL-GGFGGGPG 259
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRGG 780
GGG GG GG GG G RGG
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGG 185
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRGG 780
GG GG GG GG G G RGG
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGG 177
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 845 GGXGGGXXGGGXGGGGXGXRGG 780
GG GGG GG GG G RGG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGG 181
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 845 GGXGGGXXGGGXGGGGXGXRGG 780
GG GGG GG GG G RGG
Sbjct: 168 GGFGGGSRGGSRGGFRGGSRGG 189
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = -2
Query: 846 GGEXGGXXG---GGXGGGREXGXGGG 778
GG GG G GG GGG G GGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGG 173
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -3
Query: 851 RGGGXGG-GXXGGGXGGGGXGXRGGG 777
RGG GG G GG GG G GGG
Sbjct: 140 RGGFRGGRGGSRGGFGGNSRGGFGGG 165
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRG 783
GGG GG GG GG G RG
Sbjct: 171 GGGSRGGSRGGFRGGSRGGFRG 192
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = -3
Query: 845 GGXGG--GXXGGGXGGGGXGXRGG 780
GG GG G GG GG G RGG
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGG 161
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 851 RGGGXGGGXXGGGXGGGGXGXRGG 780
RGG G G GGG G G G R G
Sbjct: 459 RGGFGGRGGFGGGRGRGRGGARSG 482
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 849 GGGEXGGXXG-GGXGGGREXGXGG 781
G G GG G GG GGGR G GG
Sbjct: 455 GFGGRGGFGGRGGFGGGRGRGRGG 478
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 848 GGGXGGGXXGGGXGGGGXGXRGG 780
GGG GG GG GG G G GG
Sbjct: 225 GGGLGGAGLGG-LGGAGLGGFGG 246
>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 105 VNILHVVFNQTYRTK*NTTSVTRMYKTCV 191
V++ H V N+T++TK NT + + + V
Sbjct: 47 VHVFHGVVNRTFKTKGNTVGLPKSFSKAV 75
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 107 KHFTCCVQSNLPNQIEHNI 163
K F C N PN+IEH I
Sbjct: 588 KSFPICTLKNFPNRIEHTI 606
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 845 GGXGGGXXGGGXGGGGXGXRGGG 777
GG GG GG G GG RGGG
Sbjct: 508 GGRGGNYRRGGYGRGGF-RRGGG 529
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 162 SVTRMYKTCVWVLLFKIVLCYEAPPATLEAIHPXGLXVSVPDEGFSXF 305
S+TR C+ +L K V+ + P + HP V V D G S F
Sbjct: 804 SITRQLIQCLTLLNEKHVIHCDLKPENILLCHPFKSQVKVIDFGSSCF 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,769
Number of Sequences: 5004
Number of extensions: 32904
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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