Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_H11
(954 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 36 0.056
Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.30
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.30
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 33 0.40
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 33 0.40
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 1.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 1.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 1.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 1.2
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 31 1.6
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 31 1.6
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 31 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.1
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 30 2.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.1
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 30 2.8
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 30 2.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 2.8
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.8
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 2.8
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 3.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 4.9
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 4.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 4.9
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 29 6.5
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 6.5
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 6.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 8.6
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 35.5 bits (78), Expect = 0.056
Identities = 18/49 (36%), Positives = 19/49 (38%)
Frame = +3
Query: 531 PGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPXPP 677
PG+ P P RPG P L PP P Q PP G PP
Sbjct: 119 PGRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPPCQKCPPGPPGPAGPP 167
>Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical
protein F35B12.7 protein.
Length = 80
Score = 33.5 bits (73), Expect = 0.23
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -2
Query: 932 YXXKGXRGXXXGXGGRAXGGXGGXGPXGXG 843
Y G RG G GGR G GG GP G G
Sbjct: 43 YGGYGGRGPYGGYGGRGPYGYGGRGPYGGG 72
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.1 bits (72), Expect = 0.30
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Frame = +3
Query: 474 PVSAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXL--------GSRPPDD 629
PV P +V P P PG P P G P G PP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
Query: 630 PHQNSPPHXXGXPXPPP 680
P + PP G P PPP
Sbjct: 322 PSRFGPPGMGGMPPPPP 338
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXPGXIP 940
P PP P PPPP P G +P
Sbjct: 308 PGPPGMPGMPPPPPPSRFGPPGMGGMP 334
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.1 bits (72), Expect = 0.30
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Frame = +3
Query: 474 PVSAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXL--------GSRPPDD 629
PV P +V P P PG P P G P G PP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
Query: 630 PHQNSPPHXXGXPXPPP 680
P + PP G P PPP
Sbjct: 332 PSRFGPPGMGGMPPPPP 348
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXPGXIP 940
P PP P PPPP P G +P
Sbjct: 318 PGPPGMPGMPPPPPPSRFGPPGMGGMP 344
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 32.7 bits (71), Expect = 0.40
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXP 928
P PPP P PPPP +AP P
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPPP 24
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 32.7 bits (71), Expect = 0.40
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXP 928
P PPP P PPPP +AP P
Sbjct: 2 PPPPPPPPPPPPPPPPAASAPPP 24
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = +3
Query: 504 PXSPESGDXPGKXX*PKRPXRPGXRKXPXXXR---XXLGSRPPDDPHQNSPPHXXGXPXP 674
P P G PGK P +P PG P ++PP P PP G P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 675 P 677
P
Sbjct: 164 P 164
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = +3
Query: 504 PXSPESGDXPGKXX*PKRPXRPGXRKXPXXXR---XXLGSRPPDDPHQNSPPHXXGXPXP 674
P P G PGK P +P PG P ++PP P PP G P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 675 P 677
P
Sbjct: 164 P 164
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 930 PGXGAAXXXXGGGGXXXGWGGGXG 859
PG G G GG GWGGG G
Sbjct: 46 PGWGGGGPGWGRGGGGSGWGGGRG 69
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 939 GXLPGXGAAXXXXGGGGXXXGWGGGXGXXRXG 844
G G G GGGG G GGG G R G
Sbjct: 92 GGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGG 123
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = +3
Query: 504 PXSPESGDXPGKXX*PKRPXRPGXRKXPXXXR---XXLGSRPPDDPHQNSPPHXXGXPXP 674
P P G PGK P +P PG P ++PP P PP G P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 675 P 677
P
Sbjct: 164 P 164
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Frame = +3
Query: 504 PXSPESGDXPGKXX*PKRPXRPGXRKXPXXXR---XXLGSRPPDDPHQNSPPHXXGXPXP 674
P P G PGK P +P PG P ++PP P PP G P
Sbjct: 104 PGPPGPGGSPGKPGKPGKPGAPGAPGNPGKGASAPCEPVTQPPCQPCPGGPPGPAGPAGP 163
Query: 675 P 677
P
Sbjct: 164 P 164
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 IPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLG---SRPPDDPHQNSPPHXXGXPX 671
+P P PGK P +P PG P + PP P PP G P
Sbjct: 101 LPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPG 160
Query: 672 PP 677
PP
Sbjct: 161 PP 162
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 844 PXPXGPXPPXPPXARPPXPXXXPR 915
P P P PP PP PP P PR
Sbjct: 67 PPPICPPPPPPPMPCPPPPPPMPR 90
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPPXXXXAAP 922
P P PPP P PPPP + P
Sbjct: 69 PICPPPPPPPMPCPPPPPPMPRPSCP 94
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 IPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLG---SRPPDDPHQNSPPHXXGXPX 671
+P P PGK P +P PG P + PP P PP G P
Sbjct: 101 LPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPG 160
Query: 672 PP 677
PP
Sbjct: 161 PP 162
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/73 (30%), Positives = 24/73 (32%)
Frame = +3
Query: 462 PLRXPVSAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQN 641
P R P P P +G P P P R P GS PP +
Sbjct: 266 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPT-----GSLPPPQAGGS 320
Query: 642 SPPHXXGXPXPPP 680
PP G P PPP
Sbjct: 321 PPPAGTGSPPPPP 333
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 609 GSRPPDDPHQNSPP-HXXGXPXPPP 680
GS PP P + SPP G P PPP
Sbjct: 235 GSPPPPPPPKGSPPLAGSGSPPPPP 259
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 866 PPPHPXXXPPPPXXXXAAPXP 928
PPP P PPPP + P P
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/73 (30%), Positives = 24/73 (32%)
Frame = +3
Query: 462 PLRXPVSAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQN 641
P R P P P +G P P P R P GS PP +
Sbjct: 287 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPT-----GSLPPPQAGGS 341
Query: 642 SPPHXXGXPXPPP 680
PP G P PPP
Sbjct: 342 PPPAGTGSPPPPP 354
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 609 GSRPPDDPHQNSPP-HXXGXPXPPP 680
GS PP P + SPP G P PPP
Sbjct: 256 GSPPPPPPPKGSPPLAGSGSPPPPP 280
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 866 PPPHPXXXPPPPXXXXAAPXP 928
PPP P PPPP + P P
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/73 (30%), Positives = 24/73 (32%)
Frame = +3
Query: 462 PLRXPVSAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQN 641
P R P P P +G P P P R P GS PP +
Sbjct: 272 PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPT-----GSLPPPQAGGS 326
Query: 642 SPPHXXGXPXPPP 680
PP G P PPP
Sbjct: 327 PPPAGTGSPPPPP 339
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +3
Query: 609 GSRPPDDPHQNSPP-HXXGXPXPPP 680
GS PP P + SPP G P PPP
Sbjct: 241 GSPPPPPPPKGSPPLAGSGSPPPPP 265
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 866 PPPHPXXXPPPPXXXXAAPXP 928
PPP P PPPP + P P
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPP 298
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +3
Query: 480 SAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXX 659
SA + +P P +G P P P P G PP P PP
Sbjct: 699 SAGGSSALP--PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
Query: 660 GXPXPPP 680
G P PPP
Sbjct: 757 GPPPPPP 763
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPPXXXXAAPXPGXIP 940
P P PPP P PP P PG +P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 752
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 844 PXPXGPXPPXPPXARPPXPXXXPRXP 921
P GP PP PP PP P P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPP 762
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +3
Query: 480 SAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXX 659
SA + +P P +G P P P P G PP P PP
Sbjct: 699 SAGGSSALP--PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
Query: 660 GXPXPPP 680
G P PPP
Sbjct: 757 GPPPPPP 763
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPPXXXXAAPXPGXIP 940
P P PPP P PP P PG +P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 752
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 844 PXPXGPXPPXPPXARPPXPXXXPRXP 921
P GP PP PP PP P P
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPP 762
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 IPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLG---SRPPDDPHQNSPPHXXGXPX 671
+P P PGK P +P PG P + PP P PP G P
Sbjct: 101 LPGPPGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPG 160
Query: 672 PP 677
PP
Sbjct: 161 PP 162
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/67 (29%), Positives = 23/67 (34%)
Frame = +3
Query: 480 SAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXX 659
SA + +P P +G P P P P G PP P PP
Sbjct: 282 SAGGSSALP--PITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISG 339
Query: 660 GXPXPPP 680
G P PPP
Sbjct: 340 GPPPPPP 346
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPPXXXXAAPXPGXIP 940
P P PPP P PP P PG +P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLP 335
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 844 PXPXGPXPPXPPXARPPXPXXXPRXP 921
P GP PP PP PP P P
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPP 345
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +3
Query: 504 PXSPE-SGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPXPP 677
P P+ + PGK P P +PG P + PP P PP G P P
Sbjct: 94 PQGPQGTPGKPGKPGKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIP 152
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = +3
Query: 465 LRXPVSAPXKAVIPXSPESGDXPGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNS 644
L+ +A +P P PGK P RP PG P + + P
Sbjct: 89 LKRDAAACQGCCLPGLPGPDGPPGKNGAPGRPGAPGAPGFPGRP-PAVCEEITEPPCTPC 147
Query: 645 PPHXXGXPXPP 677
PP G P PP
Sbjct: 148 PPGEPGPPGPP 158
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 844 PXPXGPXPPXPPXARPPXP 900
P P GP PP PP R P P
Sbjct: 812 PYPGGPVPPGPPQNRMPPP 830
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 IPXSPESGDXPGKXX*PKR---PXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPX 671
+P P PGK P R P +PG P + PP P PP G P
Sbjct: 105 LPGPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164
Query: 672 PP 677
P
Sbjct: 165 AP 166
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 850 PXGPXPPXPPXARPPXPXXXP 912
P P PP PP RPP P P
Sbjct: 244 PGPPGPPGPPTRRPPGPPGPP 264
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 844 PXPXGPXPPXPPXARPPXPXXXP 912
P P PP PP RPP P P
Sbjct: 253 PTRRPPGPPGPPTRRPPGPPGPP 275
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXP 928
P PPP P PPPP P P
Sbjct: 133 PPPPPPPHYPPPPPHYPPPPPAP 155
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPPXXXXAAP 922
P P PPP P PPPP P
Sbjct: 127 PYQQQPPPPPPPPHYPPPPPHYPPPP 152
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 501 IPXSPESGDXPGKXX*PKR---PXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPX 671
+P P PGK P R P +PG P + PP P PP G P
Sbjct: 105 LPGPPGPAGVPGKPGKPGRPGAPGQPGVPGKPPTAPCEPTTPPPCKPCPQGPPGPPGPPG 164
Query: 672 PP 677
P
Sbjct: 165 AP 166
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 3.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPP 901
P + P PPP P PPPP
Sbjct: 350 PIISPPAPPPPPPPPPPPP 368
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 453 RSFPLRXPVSAPXKAVIPXSPESGDXP 533
+ P PVS+P K+VIP SP++ P
Sbjct: 271 KEIPASEPVSSPKKSVIPASPKAISHP 297
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 531 PGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPXPP 677
PGK P P PG P + PP P PP G P P
Sbjct: 116 PGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAP 164
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 531 PGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPXPP 677
PGK P P PG P + PP P PP G P P
Sbjct: 111 PGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAP 159
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXPGXIP 940
P PPP P PPPP +P P
Sbjct: 66 PPPPPPPMCPPPPPPMPSYSPCQSYAP 92
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPP 901
P P PPP P PPPP
Sbjct: 60 PMCPPPPPPPPPPMCPPPP 78
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 531 PGKXX*PKRPXRPGXRKXPXXXRXXLGSRPPDDPHQNSPPHXXGXPXPP 677
PGK P P PG P + PP P PP G P P
Sbjct: 111 PGKPGRPGAPGTPGTPGKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAP 159
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 845 PXLXXPXPPPHPXXXPPPP 901
P P PPP P PPPP
Sbjct: 779 PFFALPVPPPPPVPPPPPP 797
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 939 GXLPGXGAAXXXXGGGGXXXGWGGGXG 859
G L G G GGGG G GGG G
Sbjct: 94 GSLIGGGGGGGNYGGGGGNQGGGGGGG 120
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 927 GXGAAXXXXGGGGXXXGWGGGXGXXR 850
G G GGGG G+GGG G R
Sbjct: 250 GGGGRGYGGGGGGGGYGYGGGGGGRR 275
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 860 PXPPPHPXXXPPPPXXXXAAPXP 928
P PPP PPPP A P P
Sbjct: 95 PPPPPMMGGIPPPPPMFGAPPPP 117
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +3
Query: 606 LGSRPPDDPH--QNSPPHXXGXPXPPP 680
+G PP + Q PPH G P PPP
Sbjct: 74 MGGPPPHHQYHLQYPPPHGLGPPPPPP 100
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 866 PPPHPXXXPPPPXXXXAAPXP 928
PPPH PPPP P P
Sbjct: 88 PPPHGLGPPPPPPHYYTQPPP 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,806
Number of Sequences: 27780
Number of extensions: 227872
Number of successful extensions: 3000
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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