Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H08
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.53 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 712 PXSAPXPAXXPNVPPXGXGXAPRWSPXPXPXLPPPPPP 825
           P   P P   P  P    G  P  S  P P  PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQ--RGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 721 APXPAXXPNVPPXGXGXAPRWSPXPXPXLPPPPPPXP 831
           AP P   P+  P     AP+    P P   PPP   P
Sbjct: 20  APGPQPSPHQSPQ----APQRGSPPNPSQGPPPGGPP 52



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/17 (41%), Positives = 7/17 (41%)
 Frame = +1

Query: 706 PXPXSAPXPAXXPNVPP 756
           P P   P P   P  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 808  PPPPPPXP 831
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 784 SPXPXPXLPPPPPP 825
           S  P    PPPPPP
Sbjct: 335 SDTPPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 799 PXLPPPPPPXP 831
           P  P PPPP P
Sbjct: 338 PPKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 596 VVQEAAGASVAWATGTKVVEYNXIFSVGSAQFVXLSGXEDRFLCLLRVIDFVFL 435
           V Q+ + + V  A      EY      GS   + LSG   R L  +  ++ V L
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTL 302


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 596 VVQEAAGASVAWATGTKVVEYNXIFSVGSAQFVXLSGXEDRFLCLLRVIDFVFL 435
           V Q+ + + V  A      EY      GS   + LSG   R L  +  ++ V L
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,189
Number of Sequences: 438
Number of extensions: 6788
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)