Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H06
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.22 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.66 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = +3

Query: 477 PXPPLVPPXXAXXPPXGXXAPPXPPXPPPXTXPPHXPP 590
           P P   P      P  G  +PP P   PP   PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRG--SPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/54 (24%), Positives = 15/54 (27%)
 Frame = +3

Query: 414 PXXAQXTPXPFPPXTPXXXXPPXPPLVPPXXAXXPPXGXXAPPXPPXPPPXTXP 575
           P   Q +  P          P   P  P   +   P     P  PP  PP   P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 596 AGGGXVXGXRXGGGXGGXG 540
           +GG  V G   GGG GG G
Sbjct: 35  SGGSIVVGANNGGGGGGLG 53



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -3

Query: 562 GGGXGGXGGAXXPXGGXXAXXGGTRGGXGG 473
           G G    GG      G     G   GG GG
Sbjct: 21  GPGSSSAGGVVTGASGGSIVVGANNGGGGG 50


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 127 ILNNLNYFYVKL*TFSTNSSTFYLQD 50
           I NNL Y Y    TF+    TF L D
Sbjct: 221 ITNNLFYPYPPYGTFNIKGDTFDLMD 246


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 540 PXPPXPPPXTXPP 578
           P PP PPP +  P
Sbjct: 341 PAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,562
Number of Sequences: 438
Number of extensions: 5863
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)