Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H03
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0343 - 16960764-16960895,16961166-16961171,16961272-169616...    31   1.7  
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887...    30   2.9  
01_03_0248 + 14235808-14235989,14236538-14236635,14237171-142372...    30   2.9  
08_02_0292 - 15420378-15421229                                         29   6.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.9  

>10_08_0343 -
           16960764-16960895,16961166-16961171,16961272-16961640,
           16962118-16962304,16962567-16962759,16962864-16963137,
           16963215-16963374,16963985-16964199,16964784-16964876,
           16965192-16965260,16965293-16965445,16965534-16965737,
           16966416-16966691,16967336-16967431,16967585-16967788,
           16967877-16968069,16968229-16968374,16968771-16969425,
           16971462-16971774,16971989-16972139,16972602-16973815,
           16973933-16974182,16974784-16975035
          Length = 1934

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 745 GGXRRKXPRXPXGEEXGXRYCGKAGRGRNQESAGGSFQGETAWY 614
           GG RR     P  +    R  G AGRG      GG  +GE  W+
Sbjct: 852 GGGRRGGGGGPNSQRGRGRGGGGAGRGGGGGGRGGGGRGEQRWW 895


>01_07_0041 +
           40688242-40688278,40688396-40688502,40688612-40688707,
           40688859-40688915,40689033-40689194,40689310-40689394,
           40689648-40689738,40689813-40689977,40690121-40690240,
           40690330-40690402,40690482-40690650,40690741-40691651,
           40691839-40691931,40692065-40692255,40692343-40692455,
           40692757-40692783,40693915-40693949
          Length = 843

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 585 RWRXPTXL*RYQAVSPWKLPPALS 656
           RW  P+ + R   VSPWK+ PA S
Sbjct: 333 RWDEPSTIPRPDRVSPWKIEPASS 356


>01_03_0248 +
           14235808-14235989,14236538-14236635,14237171-14237204,
           14237731-14237900,14238060-14238240,14238288-14238498,
           14239122-14239233,14239360-14239487,14240201-14240263
          Length = 392

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 22/57 (38%), Positives = 27/57 (47%)
 Frame = -3

Query: 683 R*GGQGSEPGERRRELPGGNGLVSL*SCRXSPPLT*XWIFVMLVRGGGAYGKTPATR 513
           R GG+GSE  ER RE       V+  SC   PP       V+ V G G  GK+  +R
Sbjct: 3   RGGGEGSEEREREREWEEAAEAVAYDSCTWPPP-------VVAVCGPGNSGKSAFSR 52


>08_02_0292 - 15420378-15421229
          Length = 283

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 713 GRGGXGXQVLR*GGQGSEPGERRRELPGGNG 621
           G GG G +  R G   +EP  RRREL    G
Sbjct: 11  GDGGAGRRERRRGSAAAEPSGRRRELTTSGG 41


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,864,824
Number of Sequences: 37544
Number of extensions: 479630
Number of successful extensions: 1123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)