Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_H01
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    31   0.22 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   2.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   2.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    26   6.3  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   8.3  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   8.3  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           GGRG  GGG   GG    GRGG  GG
Sbjct: 23  GGRGGFGGG--RGGARGGGRGGARGG 46



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           GGRG   GG    G    GRGG  GG
Sbjct: 38  GGRGGARGGRGGRGGARGGRGGSSGG 63



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           GGRG  GG     G    GRGG  GG
Sbjct: 45  GGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           G RG  GG     G    GRGG GGG
Sbjct: 6   GSRGGRGGSRGGRGGFNGGRGGFGGG 31



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 893 GGRGXXGGG-WXEGGRXXXGRGGGGGG 816
           GGRG   GG    GG     RGGG GG
Sbjct: 16  GGRGGFNGGRGGFGGGRGGARGGGRGG 42



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXG-RGGGGGG 816
           GGRG   GG   G R   G RGG  GG
Sbjct: 30  GGRGGARGGGRGGARGGRGGRGGARGG 56


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           GGRG  GG    GG    GRGG   G
Sbjct: 457 GGRGGFGGRGGFGGGRGRGRGGARSG 482



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGG 819
           GGRG  GG    GGR   G G G G
Sbjct: 451 GGRGGFGGRGGFGGRGGFGGGRGRG 475



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           G RG  GG    GG    GRGG GGG
Sbjct: 448 GSRGGRGGFGGRGG--FGGRGGFGGG 471


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 735  PPPPPXXLPP 764
            PPPPP  +PP
Sbjct: 1707 PPPPPMSVPP 1716



 Score = 22.2 bits (45), Expect(2) = 2.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 864  PPPPXXPPPP 893
            PPPP   PPP
Sbjct: 1708 PPPPMSVPPP 1717


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           GG G  GGG    G    G GGG GG
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 893 GGRGXXGGGWXEGGRXXXGRGGGGGG 816
           GG G  GGG    G    G GGG GG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGG 260


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 380 RSRLRALPWRLLAKAL-SCCSTDSEPSFQALAEVLCVL 270
           +S+  A  W  + +AL SCC    +PS     +V C L
Sbjct: 106 KSQKSAAEWEEIERALLSCCKRSKDPSILFPTDVPCSL 143


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 97  LSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGXSNTTPRSS 228
           +S+V  G+Q  SSL LH     S  +T  S  L+      P SS
Sbjct: 163 MSSVSSGKQHLSSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSS 206


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +3

Query: 186 PTSSRXIEHHTKEFHKTLEQQFNSLTKSKDAQDFSQGLEGRLRVRAATAQRLRQ 347
           P   R +E +  +F K  E   N L+ S  A+  S+G+   L       QRL +
Sbjct: 680 PEFLRKMEVYNNQFSKNKELCSNLLSSSLTAKAISEGVSKGLEYYKTVEQRLAE 733


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 180 TLPTSSRXIEHHTKEFHKTLEQQFNSLTKSKDAQDFSQGLEGRLRVRAATAQRLRQ 347
           TLP  S+  +  T    +  EQ+ +  + SKD    S  L+G    +    Q  RQ
Sbjct: 128 TLPDHSKETQEKTSSQRELFEQKSSVASASKDNVSSSSILQGSASSKLLPDQSARQ 183


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -1

Query: 893 GGRGXXGGGW---XEGGRXXXGRGGGGGG 816
           GGRG   GG+     GG     RGG GGG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,417
Number of Sequences: 5004
Number of extensions: 31991
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)