Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G24
         (1005 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.81 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.81
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +2

Query: 737 PPXSTTXTXPPPHXXPXPPSXLPPPPXPXXPXXXLPPSPXP 859
           P        P PH  P  P    PP     P    PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 539 PXHPXPXPPSXPXXPPXPPPXPXP 610
           P +P   PP  P  PP  PP   P
Sbjct: 39  PPNPSQGPP--PGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +2

Query: 734 PPPXSTTXTXPPPHXXPXPPSXLPPPPXPXXPXXXLPPSPXP 859
           P P        P    P  PS  PPP  P       PPS  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGP----PGAPPSQNP 60


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 977  PPPPSPPPS 1003
            PPPP PPPS
Sbjct: 1355 PPPPPPPPS 1363


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 788 PPSXLPPPPXP 820
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 610 GXGGGXGXGRXXGGGGGXGXGVXGG 536
           G  GG        GGGG G G+  G
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASG 57


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 238 SLSSTYKFLNIXEGDHTNFKNS 173
           SLS+ YK+ N    ++ N+ N+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 238 SLSSTYKFLNIXEGDHTNFKNS 173
           SLS+ YK+ N    ++ N+ N+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 238 SLSSTYKFLNIXEGDHTNFKNS 173
           SLS+ YK+ N    ++ N+ N+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 238 SLSSTYKFLNIXEGDHTNFKNS 173
           SLS+ YK+ N    ++ N+ N+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNN 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,818
Number of Sequences: 438
Number of extensions: 6406
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33379164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)