Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G22
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...   108   9e-25
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    31   0.30 
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   1.2  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   4.9  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   6.5  

>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score =  108 bits (260), Expect = 9e-25
 Identities = 52/112 (46%), Positives = 70/112 (62%), Gaps = 2/112 (1%)
 Frame = +2

Query: 533 VEDDDCMFRFDYQTDFLKWALQPPGWKMEWHCGVRVVKSGRLVGFISATPADLXIYNH-V 709
           VED   M RF Y ++FL+WAL PPG+  EWH GVRV  S +LV FISA P  + + +  +
Sbjct: 117 VEDATAMLRFAYISEFLRWALMPPGYVKEWHVGVRVKSSRKLVAFISAVPLSIRVRDKII 176

Query: 710 QTVVEINFLCVHKKLRSXRVXPVLIREIXXXL-LNXYIXGCVTXGIXLPXPM 862
           +   E+NFLC+HKKLRS R+ P+LI+E+     L        T G+ LP P+
Sbjct: 177 KKCAEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENVWQAVYTAGVLLPSPV 228



 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 21/77 (27%), Positives = 41/77 (53%)
 Frame = +1

Query: 250 LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIR 429
           +++L   + + +L +K         ++ ++FW TQPVPK D++     PI+      ++ 
Sbjct: 23  IRELLDRLALRSLIEKEEAAAPPKTYEDFKFWKTQPVPKFDDECTQEGPIDPNTDINQVP 82

Query: 430 AEPYTLPDGFQWDTLNL 480
            EPY L   F+W T+++
Sbjct: 83  REPYRLLKEFEWATIDV 99


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -1

Query: 638 HEHHNAIPFSNQVVVEPISKNQFGNQNETYNHHLPHNFH*VKCTVLSIAKGSFKFKVS 465
           H H +   ++ +   E IS     N +  ++HH  HN H +   +++   GS    VS
Sbjct: 546 HNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMHGIFLHIIADTMGSVGVIVS 603


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 271 MEVLNLQQKPAKTTEEALHKAYQFWSTQPVP-KMDEKIIANEPIEL 405
           MEVL LQ+KP    +  ++K +      PV  K   K++ +E ++L
Sbjct: 588 MEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVKAQRKVMPDENLDL 633


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 235 HQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWST 351
           H+N  + + K   + +NL   P K+ E +L++ Y    T
Sbjct: 736 HENEKILEWKSTDDTINLPMNPHKSLEASLYEKYDLCIT 774


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 187 STANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTE-EALHKAYQFWSTQPVP 363
           S  N    ++P   +G+++I L    +A EVL L+   ++TT  E +   Y +   + + 
Sbjct: 155 SILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIE 214

Query: 364 KMDEK 378
           + +E+
Sbjct: 215 REEEQ 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,159
Number of Sequences: 5004
Number of extensions: 66679
Number of successful extensions: 212
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)