Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G21
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    30   0.38 
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   3.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   3.6  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.6  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   8.2  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 251 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 385
           ++DYA K     L      +  DDDL+++S  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 247 TNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSL 131
           TN C+   ++   CV L   H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -2

Query: 457 TFNKFDCASSFLDIGVVLPL*IHLNVVEGIVYICIKHFLANSEEVIVGRRILCLAQQIFV 278
           TFN  +     LDI  ++   +H+   + + Y+ +  FL +S+  I+   +  LA+    
Sbjct: 355 TFNNLEFLHYCLDISEMISSYLHVEDEKNVFYLALCEFLNSSDYSILIATLRTLARLALN 414

Query: 277 ALLLRIVNDTTNN 239
               R++ D  +N
Sbjct: 415 DRNNRLLQDLKSN 427


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 396 YKGKTTPMSRNDEAQSNLLNVPENVWSXPTIRPFVALFDNYHKNVIRPEFVTPNEETEQT 575
           Y+ K   +  ND  + + LN+P+ VW+      F++  ++Y K        T N E  +T
Sbjct: 70  YEQKLKDVKLNDINKKSPLNIPDEVWT-----KFISEVNSYDKEK-ENHLSTGNHELRRT 123

Query: 576 T 578
           T
Sbjct: 124 T 124


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 299 AQDSTTDDDLLRVSEEMFNADI 364
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,150
Number of Sequences: 5004
Number of extensions: 54850
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)