Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_G20
(895 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 37 0.004
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.89
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.7
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 27 3.6
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 6.3
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.7 bits (81), Expect = 0.004
Identities = 29/76 (38%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +2
Query: 614 PPVXLPXALSCSDPGRLPDTCPPFSLPEAWPFLHXSRLXVSHXXVXRXPXXGPXCPN-PP 790
PPV P +L S P LP + PP SLP P L S P P P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP-SLPMGAP--AAPPLPPSAPIAPPLPAGMPAAPPLPP 471
Query: 791 XXP-PPXAPXPXTXRP 835
P PP AP P P
Sbjct: 472 AAPAPPPAPAPAPAAP 487
Score = 31.5 bits (68), Expect = 0.17
Identities = 24/80 (30%), Positives = 30/80 (37%)
Frame = +2
Query: 617 PVXLPXALSCSDPGRLPDTCPPFSLPEAWPFLHXSRLXVSHXXVXRXPXXGPXCPNPPXX 796
P L + + S+P P P S P P + SR S V P P P P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR--TSTPPVPTPPSLPPSAP--PSL 431
Query: 797 PPPXAPXPXTXRPXSPPVXP 856
PP P P +PP+ P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPP 451
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 760 PXRAXVPQPPXXTPTXRPXPRYXSPXX-PPGXTPTXPPXAXPPCLP 894
P R+ PP + P +P PP P+ PP A PP LP
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA-PPSLP 440
Score = 26.6 bits (56), Expect = 4.8
Identities = 36/149 (24%), Positives = 48/149 (32%), Gaps = 4/149 (2%)
Frame = +2
Query: 425 QNQGITQERTCEPKXSKRPGTVKRPRCWRFSHRAPPPWTSITKIDAQVXGGETXPDYKDT 604
++ G + P P + R S APPP I G + P
Sbjct: 219 ESAGTPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPP------IPPPSNGTVSSPPNSPP 272
Query: 605 RPFPPVXLPXALSCSDPGRLPDTCPPFSLPEAWPFLHXSRLXVSHXXVXRX----PXXGP 772
RP PV + A++ + LP PP S A + R P G
Sbjct: 273 RPIAPVSMNPAINSTSKPPLP---PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGN 329
Query: 773 XCPNPPXXPPPXAPXPXTXRPXSPPVXPQ 859
N PPP P P + S P+ PQ
Sbjct: 330 GSSNSSLPPPP--PPPRSNAAGSIPLPPQ 356
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 775 VPQPPXXTPTXRPXPRYXSPXXPPGXTPTXPPXAXPPCLP 894
VP PP P+ P +P P P PP PP P
Sbjct: 417 VPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP--LPPSAP 454
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 751 SXAPXRAXVPQPPXXT-PTXRPXPRYXSPXXPPGXTPTXPPXAXPPCLP 894
S P R PP + PT P P P P PP A PP LP
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 751 SXAPXRAXVPQPPXXTPTXRPXPRYXS-PXXPPGXTPTXPPXAXPPCLP 894
S AP + P PP + P P P PP P P + P +P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 778 PQPPXXTPTXRPXPRYXSPXXPPGXTPTXPPXAXPP 885
P P TP RP + +P TP PP + PP
Sbjct: 1683 PAHPVSTPPVRP--QSAAPPQMSAPTPPPPPMSVPP 1716
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Frame = +2
Query: 614 PPVXLPXALSCSDPGRLPDTCPPFSLPEAWPFLHXSRLXV--SHXXVXRXPXXGPXCPNP 787
PPV LP A + P +P T PP +P + P + S + V P P P
Sbjct: 1022 PPVPLPSA--DAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Query: 788 PXXPPPXAP--XPXTXRP--XSPPV 850
PP AP P +P +PPV
Sbjct: 1080 SGAPPVPAPSGIPPVPKPSVAAPPV 1104
Score = 25.8 bits (54), Expect = 8.3
Identities = 23/79 (29%), Positives = 25/79 (31%)
Frame = +2
Query: 614 PPVXLPXALSCSDPGRLPDTCPPFSLPEAWPFLHXSRLXVSHXXVXRXPXXGPXCPNPPX 793
PPV P + S P P PP P P V V P P PP
Sbjct: 1064 PPVPAPSSEIPSIPA--PSGAPPVPAPSGIP-------PVPKPSVAAPPVPKPSVAVPPV 1114
Query: 794 XPPPXAPXPXTXRPXSPPV 850
P AP +PPV
Sbjct: 1115 PAPSGAPPVPKPSVAAPPV 1133
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.89
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 785 PPXXPPPXAPXPXTXRPXSPPVXP 856
PP PPP P P P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 782 NPPXXPPPXAPXPXTXRPXSPP 847
NPP PPP P + P PP
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +1
Query: 760 PXRAXVPQPPXXTPTXRPXPRYXSPXXPPGXTPTXPPXAXPP 885
P A +P PP P P P PPG PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPPPPP 781
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Frame = +2
Query: 677 PPFSLPEAWPFLHXSRLX----VSHXXVXRXPXXGPXCPNPPXXPPPXAPXPXTXRPXSP 844
PP S+P PF + V P P P PP +P P
Sbjct: 252 PPLSIPNVLPFTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAATIPGA 311
Query: 845 PVXPQL 862
PV P +
Sbjct: 312 PVMPNI 317
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 587 PDYKD-TRPFPPVXLPXALSCSDPGRLPDTCPP 682
P+ D T P PP+ LP LS S G CPP
Sbjct: 174 PEISDLTSPPPPINLP--LSYSATGAATSNCPP 204
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -2
Query: 855 GXTGGXSGRXVXGXGAXGGGXXGGLGHXGPXXGXR 751
G GG G GA GGG G G G G R
Sbjct: 20 GFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGAR 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,725
Number of Sequences: 5004
Number of extensions: 50105
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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