Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G20
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/38 (39%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +1

Query: 778 PQP-PXXTPTX--RPXPRYXSPXXPPGXTPTXPPXAXP 882
           PQP P  +P    R  P   S   PPG  P  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 758 PXXGPXCPNPPXXPPPXAPXPXTXRPXS 841
           P  GP    PP  PP   P      P S
Sbjct: 42  PSQGPPPGGPPGAPPSQNPSQMMISPAS 69



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 779 PNPPXXPPPXAPXPXTXRPXSPP 847
           PNP   PPP  P      P +PP
Sbjct: 40  PNPSQGPPPGGP------PGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 855 GXTGGXSGRXVXGXGAXGGGXXGGLG 778
           G   G SG  +   GA  GG  GGLG
Sbjct: 29  GVVTGASGGSIV-VGANNGGGGGGLG 53


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +2

Query: 737 HXXVXRXPXXGPXCPNPPXXPPPXAPXPXTXR-PXSPP 847
           H  + R P   P    P   P P  P P   R P + P
Sbjct: 113 HPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,500
Number of Sequences: 438
Number of extensions: 4615
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)