Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G18
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   4.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   5.4  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   7.1  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   7.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 881 LXPPLXXPLPAPXXXDPXXPFPPPXXXXTP 970
           + PPL   +PA     P  P PPP     P
Sbjct: 455 IAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -1

Query: 951 GGGKGXXGSXXXGAGRGXXRGGXR 880
           GG +G  G    G  RG  RGG R
Sbjct: 164 GGSRGGFGGGSRGGSRGGFRGGSR 187



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 683 GXGXGGRGXXGGGGXGG 633
           G G G RG  GGG  GG
Sbjct: 161 GFGGGSRGGFGGGSRGG 177


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 951 GGGKGXXGSXXXGAGRGXXRGGXR 880
           GG  G  G    G GRG  RGG R
Sbjct: 457 GGRGGFGGRGGFGGGRGRGRGGAR 480


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = -3

Query: 277 HCGTSHGPTWS---TKSWTSGFSQSGSAI 200
           + GT H P+WS   + +W +G S  G AI
Sbjct: 45  YIGTRHNPSWSHPYSVTWLNGSSYYGLAI 73


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 180 NVHLSGIFSLENVAR*RNRQLPQ 112
           N+H+SGI +LENV   +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 890 PLXXPLPAPXXXDPXXPFPPP 952
           P+  P PAP    P  P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,064
Number of Sequences: 5004
Number of extensions: 40586
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)