Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G14
         (991 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    42   2e-04
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    42   2e-04
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    42   2e-04
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.1  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 198 HXIXKCGGIEKRTIXKXXNEDXEMGKGS 281
           H I KCGGI+KRTI K   E  E+GKGS
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEATELGKGS 53



 Score = 29.5 bits (63), Expect = 0.77
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 143 LTIVXIXHVDSGKSTTXG 196
           + +V I HVDSGKSTT G
Sbjct: 8   INVVVIGHVDSGKSTTTG 25


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 198 HXIXKCGGIEKRTIXKXXNEDXEMGKGS 281
           H I KCGGI+KRTI K   E  E+GKGS
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEATELGKGS 53



 Score = 29.5 bits (63), Expect = 0.77
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 143 LTIVXIXHVDSGKSTTXG 196
           + +V I HVDSGKSTT G
Sbjct: 8   INVVVIGHVDSGKSTTTG 25


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +3

Query: 198 HXIXKCGGIEKRTIXKXXNEDXEMGKGS 281
           H I KCGGI+KRTI K   E  E+GKGS
Sbjct: 26  HLIYKCGGIDKRTIEKFEKEATELGKGS 53



 Score = 29.5 bits (63), Expect = 0.77
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 143 LTIVXIXHVDSGKSTTXG 196
           + +V I HVDSGKSTT G
Sbjct: 8   INVVVIGHVDSGKSTTTG 25


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 116 KNGQGKDXTLTIVXIXHVDSGKSTTXGS 199
           K+  GK+  + IV I HVD+GKST  G+
Sbjct: 231 KDMYGKEH-VNIVFIGHVDAGKSTLGGN 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,959
Number of Sequences: 5004
Number of extensions: 24725
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)