Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G08
         (970 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         31   1.8  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   4.2  
03_01_0515 - 3864796-3865425                                           29   5.6  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   5.6  
03_06_0599 + 34984869-34985319,34986581-34987563                       28   9.7  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 125 PPPPXFPPXXRXPXKKKKKXGPXXSPPXXXXFXAPP 232
           PPPP  PP  R P  K     P   PP      +PP
Sbjct: 156 PPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPP 191



 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 125 PPPPXFPPXXRXPXKKKKKXGPXXSPPXXXXFXAPP 232
           P PP  PP  R P K  +   P  SPP       PP
Sbjct: 244 PQPP--PPPPRAPVKMPRVLEPKPSPPPPSPLPPPP 277


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +2

Query: 119 SXPPPPXFPPXXRXPXKKKKKXGPXXSPPXXXXFXAPPXXKK 244
           S PPPP  PP    P        P   PP      APP  ++
Sbjct: 104 SQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPPPRE 145


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 119 SXPPPPXFPPXXRXPXKKKKKXGPXXSPPXXXXFXAPP 232
           S PPPP  PP    P        P   PP       PP
Sbjct: 81  SSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 125 PPPPXFPPXXRXPXKKKKKXGPXXSPP 205
           PPPP  PP    P    KK  P  +PP
Sbjct: 364 PPPPPPPPRPPPPPPPIKKGAPPPAPP 390


>03_06_0599 + 34984869-34985319,34986581-34987563
          Length = 477

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 125 PPPPXFPPXXRXPXKKKKKXGPXXSPPXXXXFXAP 229
           PPPP  PP    P   +++  P  SPP    F  P
Sbjct: 398 PPPPPQPPPPPPPPPHQRET-PSPSPPPQPQFPCP 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,753
Number of Sequences: 37544
Number of extensions: 128446
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)