Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_G06
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 42 1e-04
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 36 0.011
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.035
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.43
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.43
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 9.3
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 42.3 bits (95), Expect = 1e-04
Identities = 25/59 (42%), Positives = 27/59 (45%)
Frame = -1
Query: 653 GXWGARGLRXGXXXGGGGXFXLXGXAEGXQRXXVMXGGXGXXGGGXGXRGGPVXGXGGS 477
G G+RG R G G GG G A G R GG G GG G RGG G GG+
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR-GGRGGRGGARGGRGGSSGGRGGA 67
Score = 41.1 bits (92), Expect = 2e-04
Identities = 26/62 (41%), Positives = 27/62 (43%)
Frame = -1
Query: 644 GARGLRXGXXXGGGGXFXLXGXAEGXQRXXVMXGGXGXXGGGXGXRGGPVXGXGGSXEXG 465
G+RG R G G GG F G R GG G GG G RGG G GGS
Sbjct: 6 GSRGGRGGSRGGRGG-FNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 464 GG 459
GG
Sbjct: 65 GG 66
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGGGGXGGRXGXGXGGEGGRXXRGXGXXG 830
GG G G GG GGG G R G G GGR RG G
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/45 (46%), Positives = 21/45 (46%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGGGGXGGRXGXGXGGEGGRXXRGXGXXG 830
G GG G G G GG GG GGR G G G GGR G G
Sbjct: 24 GRGGFGGGRGGARGGGRGGA-RGGRGGRG-GARGGRGGSSGGRGG 66
Score = 36.3 bits (80), Expect = 0.007
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 961 GGGXGXGWGXXXXGGXGGGGXGGRXGXGXGGEGGRXXRGXGXXG 830
GG G G GG GG GG G GG GGR G G
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 33.1 bits (72), Expect = 0.061
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGGGGXGGRXGXGXGGEGG-RXXRG 845
GG G G GG GG G GGR G GG GG R RG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFG-GGRGGARGGGRGGARGGRG 48
Score = 31.5 bits (68), Expect = 0.19
Identities = 24/65 (36%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Frame = -1
Query: 680 RXGRGXPX*GXWGARGLRXGXXXG-GGGXFXLXGXAEGXQRXXVMXGGXGXXGGGXGXRG 504
R GRG G G G R G G GG G A G + G G GG G RG
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGR--GGARGGRGGSSGGRG 65
Query: 503 GPVXG 489
G G
Sbjct: 66 GAKGG 70
Score = 30.7 bits (66), Expect = 0.33
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGG--GGXGGRXGXGXGGEGG 860
G G G G GG GG GG GG G G +GG
Sbjct: 34 GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGGGGXGGRXGXGXGGEGGRXXRGXGXXG 830
G GG G+G GG GGG GG G GG G RG G
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG-GFRGGSRGG 189
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 542 GXGXXGGGXGXRGGPVXGXGGSXEXGGG 459
G G GG G RGG G GG+ G G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFG 163
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 961 GGGXGXGWGXXXXGGXGGGGXGGRXGXGXG 872
GGG G+G GG GG GG G G
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.035
Identities = 24/65 (36%), Positives = 25/65 (38%)
Frame = -1
Query: 653 GXWGARGLRXGXXXGGGGXFXLXGXAEGXQRXXVMXGGXGXXGGGXGXRGGPVXGXGGSX 474
G +G G G G GG G EG GG G GGG G GG G GG
Sbjct: 211 GGFGGEGHHHGGHGGFGGG---PGGFEGGPGG--FGGGPGGFGGGLGGFGGGPGGFGGGP 265
Query: 473 EXGGG 459
GG
Sbjct: 266 GGHGG 270
Score = 31.9 bits (69), Expect = 0.14
Identities = 24/72 (33%), Positives = 27/72 (37%)
Frame = -1
Query: 674 GRGXPX*GXWGARGLRXGXXXGGGGXFXLXGXAEGXQRXXVMXGGXGXXGGGXGXRGGPV 495
G P G +G G G GG G G + GG G GGG G GG +
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFE------GGPGGFGGGPGGFGGGL 251
Query: 494 XGXGGSXEXGGG 459
G GG GG
Sbjct: 252 GGFGGGPGGFGG 263
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGGGGXGGRXGXGXGGEGGRXXRGXGXXG 830
G GG G G+G G GG GG G G EGG G G G
Sbjct: 203 GPGGFG-GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXG-GGGXGGRXGXG 878
G GG G G G G G GGG GG G G
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 29.1 bits (62), Expect = 1.00
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -1
Query: 644 GARGLRXGXXXGGGGXFXLXGXAEGXQRXXVMXGGXGXXGGGXGXRGGP 498
G G G GGG G G GG G GGG G GGP
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGG------FGGGPGGFGGGPGGHGGP 271
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 30.3 bits (65), Expect = 0.43
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = -2
Query: 964 GGGGXGXGWGXXXXGGXGGGG--XGGRXGXGXGG-EGGRXXRG 845
GGG G G GG GG G GGR G G GG G RG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGR-GRGRGGARSGNPNRG 487
Score = 29.9 bits (64), Expect = 0.57
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 913 GGGGXGGRXGXGX-GGEGGRXXRGXG 839
GGG GGR G G GG GGR G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGG 471
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.43
Identities = 21/78 (26%), Positives = 25/78 (32%)
Frame = +2
Query: 449 ASXXPPPLXHSPPXXXPXPHXSPXPPRXXLXPPXXXXXFAXLRPNXTTXTXPXPPXXXPR 628
AS PP P + PPR + PP P + P P P
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA-----PPIPSKAPPIPSSLPPP 174
Query: 629 ATXXXPTXLXPXTPSLPA 682
A P P PSLP+
Sbjct: 175 AQPAAPVKSPPSAPSLPS 192
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 907 GGXGGRXGXGXGGEGGRXXR 848
GG GGR G GG GGR R
Sbjct: 124 GGFGGRGGGRMGGRGGRGRR 143
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 964 GGGGXGXGWGXXXX-GGXGGGGXGGRXGXG 878
GGG G G GG GGG GGR G G
Sbjct: 112 GGGHHGPLHGPHGGFGGRGGGRMGGRGGRG 141
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 7.0
Identities = 21/80 (26%), Positives = 23/80 (28%), Gaps = 1/80 (1%)
Frame = +2
Query: 437 PYRXASXXPPPLXHSPPXXXPXPHXSPXPPRXXLXP-PXXXXXFAXLRPNXTTXTXPXPP 613
P A P P PP P P PP P P + P T P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Query: 614 XXXPRATXXXPTXLXPXTPS 673
P PT P P+
Sbjct: 1224 AGLP--PVPVPTAKAPPVPA 1241
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +1
Query: 157 TPTQETATNLXTTARTSLILPKTTTLMETATNLSTTVHITWTVPKARPYFKPTPFP 324
T T T TN TS +T++ T + S + IT TVP P P
Sbjct: 153 TSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIP 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,172
Number of Sequences: 5004
Number of extensions: 41514
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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