Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G05
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.54 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.7  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   8.8  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +1

Query: 733 PRPXIPXTXLCPXXMXXPPPPNPXXXPPSTLXXPPXDDRXXXTPXXTHPP 882
           P P  P + L P       PP P   PPS    PP   +    P    PP
Sbjct: 128 PAPPTPQSELRPPTSA---PPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174



 Score = 29.5 bits (63), Expect = 0.72
 Identities = 22/79 (27%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
 Frame = +1

Query: 661 PAXTTPXXXTXXPXATXPLPXXHXPRPX----IPXTXLCPXXMXXPPPPNPXXXPPSTLX 828
           PA  TP      P +  P P    P P     IP +   P     PPP  P     S   
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIP-SKAPPIPSSLPPPAQPAAPVKSPPS 186

Query: 829 XPPXDDRXXXTPXXTHPPP 885
            P         P    PPP
Sbjct: 187 APSLPSAVPPMPPKVPPPP 205


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/52 (28%), Positives = 16/52 (30%)
 Frame = +1

Query: 646 PXTRPPAXTTPXXXTXXPXATXPLPXXHXPRPXIPXTXLCPXXMXXPPPPNP 801
           P   PPA   P           P P    P P  P   +       PPPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 766 PXXMXXPPPPNPXXXPPSTLXXPP 837
           P     PPPP P   PPS    PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 29/127 (22%), Positives = 39/127 (30%), Gaps = 4/127 (3%)
 Frame = +1

Query: 517 PXASTQPTATVSTCPLL-TRSIPYFFXDXHVIXKXLYXXHDXXXPXTRPPAXTT---PXX 684
           P +  +P A VS  P + + S P        +       +    P   PP+      P  
Sbjct: 268 PNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPI 327

Query: 685 XTXXPXATXPLPXXHXPRPXIPXTXLCPXXMXXPPPPNPXXXPPSTLXXPPXDDRXXXTP 864
                 ++ P P    PR     +   P      PPP P    PST   PP         
Sbjct: 328 GNGSSNSSLP-PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVS 386

Query: 865 XXTHPPP 885
               PPP
Sbjct: 387 NPPAPPP 393


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/81 (24%), Positives = 23/81 (28%)
 Frame = +1

Query: 646  PXTRPPAXTTPXXXTXXPXATXPLPXXHXPRPXIPXTXLCPXXMXXPPPPNPXXXPPSTL 825
            P   PP           P  +  +P    P   +P     P     PP P P    P   
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV---PPPSEAPPVPKPSVGVPPV- 1210

Query: 826  XXPPXDDRXXXTPXXTHPPPP 888
              PP       TP    PP P
Sbjct: 1211 -PPPSTAPPVPTPSAGLPPVP 1230


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/61 (24%), Positives = 20/61 (32%)
 Frame = +1

Query: 697  PXATXPLPXXHXPRPXIPXTXLCPXXMXXPPPPNPXXXPPSTLXXPPXDDRXXXTPXXTH 876
            P +T P+       P +      P  M  PPPP+    P      PP        P   +
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745

Query: 877  P 879
            P
Sbjct: 1746 P 1746


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 784 PPPPNPXXXPPSTLXXPPXDDRXXXTPXXTHPPPP 888
           PPPP     P ++   PP   +    P    P PP
Sbjct: 208 PPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,679
Number of Sequences: 5004
Number of extensions: 37803
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)