Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_G02
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0327 - 7284829-7284889,7284946-7286126 31 1.2
12_02_1174 - 26696869-26698191 30 2.9
02_04_0021 + 18975992-18976408 29 3.8
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.0
08_01_0059 - 394001-394708 29 6.6
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 29 6.6
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712... 29 6.6
12_01_0319 + 2440129-2440661,2440875-2440902 28 8.8
11_04_0009 - 12132781-12133272 28 8.8
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 553 PXXPPPXPPXPXPRGR 600
P PPP PP P PRGR
Sbjct: 55 PPPPPPPPPPPPPRGR 70
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/103 (25%), Positives = 29/103 (28%)
Frame = +1
Query: 553 PXXPPPXPPXPXPRGRGXPXXGGXXXPXLKKXLGGXGXPPTXXXRXXXXSXGXXAXPXAX 732
P PPP PP P PR P L PP R
Sbjct: 153 PPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQP 212
Query: 733 XXXLXXRXNTXXPPPXXLPFXFPRSRGXXXXXXXXLXXTPPPP 861
L + PPP +P PR+ G PPPP
Sbjct: 213 PPTLP--PPSPPPPPPTVP---PRTPGDTPAVVEPKPQPPPPP 250
>02_04_0021 + 18975992-18976408
Length = 138
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 473 TLCCKIENQ*NILYIIXXXXXXXXPXXPXXXPPPXPXPXPGAXXP 607
TLC NQ +I+ ++ P PPP P P P A P
Sbjct: 76 TLCVVSCNQNSIVCMVRCALTPPPPKPKPTPPPPAPTPKPPAPSP 120
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.0
Identities = 28/111 (25%), Positives = 30/111 (27%)
Frame = -2
Query: 897 GGGGXKXXXXXPXGXGGXXXXXXXXPXXPPGXGKXKRKAXGXXXXGVXAGXKGXXXSXGX 718
GGGG P G GG P G G +R G G A G G
Sbjct: 110 GGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPG-----GG 164
Query: 717 XXXSXRXAVXXXXXSGGXXXXXKGFF*XXXPXTPXXGGXXAPGXGXGXGGG 565
+ GG G P GG G G G G G
Sbjct: 165 RGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGGGGEG 215
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +1
Query: 562 PPPXPPXPXPRGRGXPXXG-GXXXPXLKKXLGGXGXPP 672
PPP PP P P G G P GG G PP
Sbjct: 349 PPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPP 386
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 545 PXXPXXXPPPXPXPXPGAXXPP 610
P P PPP P P P A PP
Sbjct: 27 PPSPPIRPPPPPTPRPYAPPPP 48
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 553 PXXPPPXPPXPXPRGR 600
P PPP PP P PR R
Sbjct: 308 PPPPPPPPPPPMPRSR 323
>02_02_0140 +
7125914-7126264,7126426-7126677,7126766-7126861,
7127013-7127187,7127283-7127363,7127451-7127548,
7127828-7127920,7128607-7128678,7128998-7129117,
7129210-7129260,7130026-7130211,7130355-7130411
Length = 543
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +1
Query: 553 PXXP-PPXPPXPXPRGRGXP 609
P P PP PP P P GRG P
Sbjct: 38 PSPPRPPSPPSPLPGGRGVP 57
>12_01_0319 + 2440129-2440661,2440875-2440902
Length = 186
Score = 28.3 bits (60), Expect = 8.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 562 PPPXPPXPXPRGRGXPXXG 618
PPP PP P PR P G
Sbjct: 46 PPPPPPPPPPRAAAAPRLG 64
>11_04_0009 - 12132781-12133272
Length = 163
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 219 RSSTWAREQRWSCSKPAPERRRRIGSLR 136
R W RE+R S + P +RRR+G R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,942,643
Number of Sequences: 37544
Number of extensions: 417995
Number of successful extensions: 3312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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