Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_G01
         (1069 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.030
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.48 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.64 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   2.6  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 304 GPPPXXAXPPPXXFXXGPPPPPP 372
           GPPP    PPP     GPPPPPP
Sbjct: 760 GPPPPP--PPPGVAGAGPPPPPP 780



 Score = 33.5 bits (73), Expect = 0.052
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 274 PPXXXGGXXXGPPPXXAXPPPXXFXXGPPPPPPXGXRXKKPP 399
           PP         P P    PP       PPPPPP G     PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +2

Query: 302 GXPPPXXPXXXXXXFXXAPPPPPPXGXXXKNPPXFXXTPWGXP 430
           G PPP  P          PPPPPP          +   P   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
 Frame = +3

Query: 183 KKPXXPPPXT---QKXPXXXPXXXXXPXGXGGXPPPLXGGGXXGXPPPXGXP 329
           K P  PPP        P   P     P   G  PPP   G     PPP   P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
 Frame = +3

Query: 180 KKKPXXPPPXTQKXPXXXPXXXXXPXGXGG---XPPPLXGGGXXGXPPPXGXP 329
           K  P  PP      P   P     P    G    PPP  G    G PPP   P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 316 GGGXPXXPPPXXGGGXPPXP 257
           GG  P  PPP   G  PP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 353 APPPPPPXGXXXKNPPXFXXTPWGXPPSPLXFXXPP 460
           +PPPPPP        P     P   PP+P+    PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVP---PPAPIMGGPPP 763



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
 Frame = -1

Query: 322 PXGGGXPXXPPP--XXGGGXPPXP 257
           P  GG P  PPP    G G PP P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 274 PPXXXGGXXXGPPPXXAXPPPXXFXXGPPPPPP 372
           PP         P P     PP     G PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 304 GPPPXXAXPPPXXFXXGPPPPPPXGXRXKK 393
           G PP    PP       PPPPPP G   K+
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 302 GXPPPXXPXXXXXXFXXAPPPPPP 373
           G PPP  P          PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +1

Query: 253  PXGXGGXPPXXX--GGXXXGPPPXXAXPPPXXFXXGPPPPPP 372
            P    G PP      G    PPP  A P P      PP PPP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 19/74 (25%), Positives = 20/74 (27%)
 Frame = +2

Query: 239  PXXXXPRGGGXXPPXXGGGXXGXPPPXXPXXXXXXFXXAPPPPPPXGXXXKNPPXFXXTP 418
            P    P  G    P    G    PPP             PP PPP        P      
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP-----STAPPVPTPS 1223

Query: 419  WGXPPSPLXFXXPP 460
             G PP P+     P
Sbjct: 1224 AGLPPVPVPTAKAP 1237



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
 Frame = +1

Query: 253  PXGXGGXPPXXXGGXXXGPPPXXAXPP-PXXFXXGPPPPPPXG 378
            P   G  P     G    P P  A PP P      PP P P G
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 19/74 (25%), Positives = 20/74 (27%)
 Frame = +2

Query: 239 PXXXXPRGGGXXPPXXGGGXXGXPPPXXPXXXXXXFXXAPPPPPPXGXXXKNPPXFXXTP 418
           P     R     PP       G  PP            APPP  P       PP    + 
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASR 411

Query: 419 WGXPPSPLXFXXPP 460
              PP P     PP
Sbjct: 412 TSTPPVPTPPSLPP 425



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 355 PPPPPPXGXRXKKPPL 402
           PPPPPP      KPP+
Sbjct: 312 PPPPPPSRRNRGKPPI 327



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/68 (26%), Positives = 20/68 (29%)
 Frame = +2

Query: 233 PXPXXXXPRGGGXXPPXXGGGXXGXPPPXXPXXXXXXFXXAPPPPPPXGXXXKNPPXFXX 412
           P P    P  G   PP         PP   P         + P  PP G   +       
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP----GRSAPALPPLGNASRTSTPPVP 418

Query: 413 TPWGXPPS 436
           TP   PPS
Sbjct: 419 TPPSLPPS 426


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 307  PPPXXAXPPPXXFXXGPPPPPPXGXRXKKP 396
            PPP  A P P      PPPP P       P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 311  PPXXPXXXXXXFXXAPPPPPPXGXXXKNPPXFXXTPWGXPPSP 439
            PP  P         AP PPPP       PP     P G P +P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPP-PMSVPPPPSAPPMPAGPPSAP 1731



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
 Frame = +1

Query: 307  PPPXXAXPPP---XXFXXGPP--PPPP 372
            PPP  + PPP        GPP  PPPP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +2

Query: 359 PPPPPXGXXXKNPPXFXXTPWGXPPSPLXFXXPP 460
           PPP       K+PP     P   PP P     PP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 353  APPPPPPXGXXXKNPPXFXXTPWGXPPSP 439
            APPPPPP       PP    T    P  P
Sbjct: 1881 APPPPPPMALPKAGPPSAAPTSALPPAGP 1909


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
 Frame = +1

Query: 238 PXXXXPXGXG---GXPPXXXGGXXXGPPPXXAXPPPXXFXXGPPPP 366
           P    P G G   G  P    G   G     A PPP  F  G PPP
Sbjct: 98  PGVARPAGRGIPLGQAPVGLAGPVRGVG-YTAPPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.151    0.530 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,599
Number of Sequences: 5004
Number of extensions: 23924
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)