Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F23
         (975 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 917 PXPPPPPPXPPXXPPXPPP 973
           P   PPP  PP  PP   P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 923 PPPPPPXPPXXPPXPPP 973
           P P    PP  PP  PP
Sbjct: 40  PNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 917 PXPPPPPPXPPXXPP 961
           P P PPPP P    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 917 PXPPPPPPXPP 949
           P  P PPP PP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 929 PPPPXPPXXPP 961
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 917  PXPPPPPP 940
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 923  PPPPPPXP 946
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 926  PPPPPXPP 949
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 917  PXPPPPPP 940
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 975  GGGGXGGXXGGXGGGGG 925
            GGGG     GG GG GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 975  GGGGXGGXXGGXGGGGG 925
            GGGG     GG GG GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 592 GGARGXRXXKGGGXGRGG 539
           G  +G    KGG  GRGG
Sbjct: 79  GRGKGRGHGKGGSRGRGG 96


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 428 NSFYTKHHHFMHQGSRF-KERALIRN 354
           NS  ++ H F H  SR+ +ER+  R+
Sbjct: 215 NSLRSRTHDFQHTSSRYSRERSCSRD 240


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 222 YMKLYSYNQETXNCEEFIYGGCQGNDNRF 308
           Y  + S+N    N ++F  G  Q ND ++
Sbjct: 264 YSAMSSHNLNYVNTKQFTQGKFQANDIQY 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,163
Number of Sequences: 438
Number of extensions: 5021
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)