Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_F21
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.23
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 1.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.3
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 574 PXXPPPPPPPP 606
P PPPPPPPP
Sbjct: 942 PAFPPPPPPPP 952
Score = 26.6 bits (56), Expect(2) = 0.23
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 22.6 bits (46), Expect(2) = 0.23
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +1
Query: 556 PXXXXXPXXPPPPPPP 603
P P PPPPP P
Sbjct: 899 PTIITHPTPPPPPPLP 914
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1
Query: 574 PXXPPPPPPPP 606
P PPPPPPPP
Sbjct: 6 PGNPPPPPPPP 16
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 556 PXXXXXPXXPPPPPPP 603
P P PPPPPPP
Sbjct: 15 PPGFEPPSQPPPPPPP 30
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 556 PXXXXXPXXPPPPPPPP 606
P P PPPPPPP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 584 PPPPPPPXXP 613
PPPPPPP P
Sbjct: 238 PPPPPPPTLP 247
Score = 25.4 bits (53), Expect(2) = 1.4
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 574 PXXPPPPPPPP 606
P PPPPPPP
Sbjct: 234 PLPAPPPPPPP 244
Score = 21.0 bits (42), Expect(2) = 1.4
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 556 PXXXXXPXXPPPPP 597
P P PPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.3
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 583 PPPPPPPP 606
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,962
Number of Sequences: 5004
Number of extensions: 16446
Number of successful extensions: 261
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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