Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F18
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    39   0.001
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    35   0.015
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    29   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.2  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   9.1  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 767 RGWRXGGXRXGVGGRGXXGGXGXXXXGGXGXGTRRGXGGE-XCXGGXGGERXXXGG 603
           RG   GG     GGRG  GG      GG   G R G GG     GG GG     GG
Sbjct: 11  RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 22/49 (44%), Positives = 23/49 (46%)
 Frame = -2

Query: 749 GXRXGVGGRGXXGGXGXXXXGGXGXGTRRGXGGEXCXGGXGGERXXXGG 603
           G R G  GRG  GG      GG G G+R G GG    G  GG R   GG
Sbjct: 129 GARNGPAGRGGRGGF----RGGRG-GSRGGFGGNSRGGFGGGSRGGFGG 172



 Score = 32.7 bits (71), Expect = 0.079
 Identities = 18/45 (40%), Positives = 19/45 (42%)
 Frame = -2

Query: 737 GVGGRGXXGGXGXXXXGGXGXGTRRGXGGEXCXGGXGGERXXXGG 603
           G GGRG   G      GG G  +R G GG    G  GG R    G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG 180


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 580  LRXQVAQTPPXXXRSPPXPPXQXSPPXPLLVPXPXPPXXXXP 705
            +R Q A  P     +PP PP    PP P   P P  P    P
Sbjct: 1692 VRPQSAAPPQMSAPTPPPPPMSV-PPPPSAPPMPAGPPSAPP 1732



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = +1

Query: 601  TPPXXXRS--PPXPPXQXSPPXPLLVPXP--XPPXXXXP 705
            TPP   +S  PP       PP P+ VP P   PP    P
Sbjct: 1689 TPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 536 SIRSPPXNSLPNIHPSGPRW 595
           ++R  P N LPN+ PS  RW
Sbjct: 354 ALRGTPVNELPNLDPSESRW 373


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 619 RSPPXPPXQXSPPXPLLVPXPXPP 690
           +SPP PP     P P   P P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPP 753


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 592 VAQTPPXXXRSPPXPPXQXSPPXPLLVPXPXPP 690
           +A  PP     PP PP    P  P   P P PP
Sbjct: 1   MASLPPGNPPPPPPPPGFEPPSQP---PPPPPP 30


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 680 GXGTRRGXGGEXCXGGXGGERXXXGG 603
           G G+R G GG    GG GG     GG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGG 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,217
Number of Sequences: 5004
Number of extensions: 31830
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)