Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F17
         (945 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.3  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/49 (20%), Positives = 21/49 (42%)
 Frame = -2

Query: 233 PFPTVGWAKNGXGVIDHN*VGVFHYPNGVLSVGHSQQSEDENHEEFHFY 87
           P P + W K+G  +  H    V  +P G  ++    + +    ++  +Y
Sbjct: 50  PRPEITWLKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQKDAGYY 98


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 324  CILRGPSPRPTLLQA 368
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 746 TPPXPPPXPXXXXXPGP 796
           TPP P P P      GP
Sbjct: 337 TPPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +2

Query: 737 PXXTPPXPPPXPXXXXXPGPRGXXPAXFPXPXXXXPP 847
           P    P P P P        RG  P     P    PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,371
Number of Sequences: 438
Number of extensions: 5413
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)