Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F16
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.10 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +1

Query: 748 PXPPPXXHISPXPXXXSALVXPAXPAXPXXPXXXPPXXNP 867
           P P P  H SP      +   P+    P  P   PP  NP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 366 APSSIPEPMNPDANGSCPDPPPPRM---ATLILSSC 268
           +P+S P  ++  A  S    P P     ATL+LS C
Sbjct: 822 SPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 342 MNPDANGSCPDPP 304
           +  D N SCP PP
Sbjct: 610 LKTDTNQSCPSPP 622


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 214 CVPTVAIASEAPGHHHQETG*QYESGHP 297
           C P++ +    PGHH+   G Q +  +P
Sbjct: 52  CDPSL-LRQGVPGHHYGAAGSQQDMPYP 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,248
Number of Sequences: 438
Number of extensions: 5139
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)