Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_F15
(1112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.031
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 6.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 6.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 6.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.006
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +2
Query: 773 PPPPXXXGXXXXXPXXXXXPXPPPPXXXXXPXXXXXXXXXXXPPPPPPPP 922
PPPP P P P P P PPPPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.5 bits (73), Expect = 0.054
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Frame = +2
Query: 776 PPPXXXGXXXXXPXXXXXPXPPPPXXXXXPXXXXXXXXXXX---PPPPPPPP 922
PPP P P PPP P PPPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.3 bits (75), Expect = 0.031
Identities = 21/69 (30%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Frame = +2
Query: 728 PPXGGGGXXXKXXXTPPPPXXX--GXXXXXPXXXXXPXPPP----PXXXXXPXXXXXXXX 889
PP G G PPPP G P P PPP P P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 890 XXXPPPPPP 916
PP PPP
Sbjct: 385 VSNPPAPPP 393
Score = 31.1 bits (67), Expect = 0.29
Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Frame = +2
Query: 773 PPPPXXXGXXXXXPXXXXXPXPPPPXXXXX--PXXXXXXXXXXXPPPPPPP 919
PPP P PPPP P PPPPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 28.3 bits (60), Expect = 2.0
Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Frame = +2
Query: 758 KXXXTPPPPXXXGXXXXXPXXXXX-----PXPPPPXXXXXPXXXXXXXXXXXPPPPPPP 919
K PPPP P P PPPP PPPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +2
Query: 812 PXXXXXPXPPPPXXXXXPXXXXXXXXXXXPPPPPPP 919
P P PPPP P P PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 2.0
Identities = 19/87 (21%), Positives = 19/87 (21%)
Frame = +2
Query: 725 PPPXGGGGXXXKXXXTPPPPXXXGXXXXXPXXXXXPXPPPPXXXXXPXXXXXXXXXXXPP 904
P P G PP P G P P P P PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193
Query: 905 PPPPPPXXXXXXXXXXXXQPXXXXPXP 985
P PP P P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 830 PXPPPPXXXXXPXXXXXXXXXXXPPPPPPP 919
P PPPP P PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQ--------PPPPPPP 30
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 900 PPPPPPPP 923
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 720 PPPPPXGGGXXXXKXXTHPPPP 785
PPPPP G PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 899 PPPPPPPP 922
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 900 PPPPPPPP 923
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 900 PPPPPPPP 923
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 900 PPPPPPPP 923
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 23.4 bits (48), Expect(2) = 7.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 899 PPPPPPPP 922
P PPPPPP
Sbjct: 236 PAPPPPPP 243
Score = 21.0 bits (42), Expect(2) = 7.2
Identities = 8/23 (34%), Positives = 8/23 (34%)
Frame = +2
Query: 779 PPXXXGXXXXXPXXXXXPXPPPP 847
PP P P PPPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPP 195
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 899 PPPPPPPP 922
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 899 PPPPPPPP 922
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 900 PPPPPPPP 923
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 899 PPPPPPPP 922
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 8.2
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = -3
Query: 918 GGGGGGGXXXXXXXXXXXGXXXXXGGGGXGXXXXXGXXXXXPXXXGGGGVXXXFXXXPPP 739
G GG GG G GGG G G P GGG F P
Sbjct: 203 GPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG--LGGFGGGPGG 260
Query: 738 PXGGGG 721
GG G
Sbjct: 261 FGGGPG 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,287
Number of Sequences: 5004
Number of extensions: 29069
Number of successful extensions: 329
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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