Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_F13
(1168 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 39 0.001
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.019
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.71
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.94
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.94
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 6.6
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 1161 GRGXXXGRGXGG-EGGXGXXXGAXGGXGRXGGGXAGXGGG 1045
GRG G G GG GG G GA GG G GG G GG
Sbjct: 31 GRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 33.9 bits (74), Expect = 0.044
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -2
Query: 1155 GXXXGRGXGGEGGXGXXXGAXGGXGRXGGGXAGXGGG 1045
G GRG GG G G GG G GG G GG
Sbjct: 27 GFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 30.7 bits (66), Expect = 0.41
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -2
Query: 1161 GRGXXXGRGXGGEGGXGXXXGAXGG--XGRXGGGXAGXGG 1048
GRG G G GG G G GG G GG G GG
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGG 49
Score = 29.5 bits (63), Expect = 0.94
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = -2
Query: 1122 GGXGXXXGAXGGXGRXGGGXAGXGGGXXXXXXXXXXAPEEXXXGXGRXXXGXG 964
G G G+ GG G GG G GGG G G G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 29.5 bits (63), Expect = 0.94
Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 1155 GXXXGRGXGGEGGXGXXXGAXGGXGRX-GGGXAGXGGG 1045
G GRG G GG G G GG G GG G GG
Sbjct: 6 GSRGGRG-GSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 35.9 bits (79), Expect = 0.011
Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 1161 GRGXXXGRGXGGEGGXGXXXGAXGGX-GRXGGGXAGXGGG 1045
G G G GG GG G G GG G GGG G GGG
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Score = 35.5 bits (78), Expect = 0.014
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 1161 GRGXXXGRGX--GGEGGXGXXXGAX-GGXGRXGGGXAGXGGG 1045
G G G G GG GG G G GG G GGG G GGG
Sbjct: 209 GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250
Score = 35.1 bits (77), Expect = 0.019
Identities = 19/39 (48%), Positives = 19/39 (48%)
Frame = -2
Query: 1161 GRGXXXGRGXGGEGGXGXXXGAXGGXGRXGGGXAGXGGG 1045
G G G G EGG G G GG G GGG G GGG
Sbjct: 222 GHGGFGGGPGGFEGGPG---GFGGGPGGFGGGLGGFGGG 257
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.019
Identities = 27/92 (29%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Frame = +2
Query: 428 PPXPPPXXSXXXPXGXP----PXPQPTPXPXFFXXAXXPFXXXXXX---NXXXAXRAXFX 586
PP PP S P P P P P P P + P + A +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 587 PPXPPPSXXXTXXA-AXXSXXPXPPPTXQXHN 679
PP PPPS + A A P PPP N
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRN 321
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +2
Query: 428 PPXPPPXXSXXXPXGXPPXPQPTPXPXFFXXAXXPFXXXXXXNXXXAXRAXFXPPXPPPS 607
PP PPP + PP + P P A + + RA PP PPP+
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS---SSRAVSNPPAPPPA 394
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.23
Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Frame = +2
Query: 428 PPXPPPXXSXXX---PXGXPPXPQPTPXPXFFXXAXXPFXXXXXXNXXXAXRAXFXPPXP 598
PP P P + P G PP P+P+ A P A PP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPS-------VAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 599 PPSXXXTXXAAXXSXXPXPPPT 664
PPS P PPP+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPS 1214
Score = 27.1 bits (57), Expect = 5.0
Identities = 22/84 (26%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Frame = +2
Query: 428 PPXPPPXXSXXXPX---GXPPXPQPTPX--PXFFXXAXXPFXXXXXXNXXXAXRAXFXPP 592
PP P P + P PP P P+ P A P + PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Query: 593 XPPPSXXXTXXAAXXSXXPXPPPT 664
PPPS P P PT
Sbjct: 1210 VPPPSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 6.6
Identities = 19/77 (24%), Positives = 23/77 (29%), Gaps = 1/77 (1%)
Frame = +2
Query: 437 PPPXXSXXXPXGXPPXPQP-TPXPXFFXXAXXPFXXXXXXNXXXAXRAXFXPPXPPPSXX 613
P P S P PP P P + P + P + PP P PS
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA 1110
Query: 614 XTXXAAXXSXXPXPPPT 664
A P P P+
Sbjct: 1111 VPPVPAPSGAPPVPKPS 1127
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.71
Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 1161 GRGXXXGRGXGGEGGXGXXXGAXGGXGRXG---GGXAGXGGG 1045
GRG GRG G GG G G GG R G G G GGG
Sbjct: 136 GRG---GRG-GFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173
Score = 29.5 bits (63), Expect = 0.94
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 1161 GRGXXXGRGXGGEGG-XGXXXGAXGGXGRXGGGXAGXGG 1048
GRG G G GG G G GG R G G GG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = -2
Query: 1161 GRGXXXGRGXGGEGGXGXXXGAXGGXG--RXGGGXAGXGGG 1045
GRG G G GG G G+ GG G GG G GG
Sbjct: 146 GRGGSRG-GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.94
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 1143 GRGXGGEGGXGXXXGAXGGXGRXGGGXAGXGGGXXXXXXXXXXAP 1009
G GG GG G G G G GG G GG AP
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAP 491
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.94
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 410 GXGXXXPPXPPPXXSXXXPXGXPPXPQPTPXP 505
G G PP PPP S P PQ P P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Frame = +1
Query: 589 PXPPPLXXTNTXXRXXLXLXPPXS--NXPXXQXAAXXXXAXXPPPXPXPPP 735
P PPP T + + PP P PPP P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 416 GXXXPPXPPPXXSXXXPXGXPPXPQPTP 499
G PP PPP + P PP P P P
Sbjct: 759 GGPPPPPPPPGVAGAGP---PPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +2
Query: 1046 PPPXPAXPPPXLPXPPXAP 1102
PPP P PP P PP P
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 428 PPXPPPXXSXXXPXGXPPXPQP 493
PP PPP P PP P P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 992 PXXXSSGAXXXXXXXXXXPPPXPAXPPPXLPXPPXAP 1102
P S A PPP PPP P P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,477
Number of Sequences: 5004
Number of extensions: 23120
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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