Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F12
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    36   0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.53 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.70 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.92 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   4.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.5  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +1

Query: 187 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 366
           ++R F  RSS  ++ S   K ++D      +R+T +   + V+EQ ++     K+  H  
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664

Query: 367 DVIVRP 384
           DV VRP
Sbjct: 665 DVYVRP 670


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +3

Query: 849 PPXPPXXPPXPPPPPP-XXXAXPP 917
           PP P    P PPPPPP    A PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = +3

Query: 849 PPXPPXX----PPXPPPPPPXXXA 908
           PP PP      PP PPPPPP   A
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSA 787



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 6/22 (27%)
 Frame = +3

Query: 849 PPXPPXXP------PXPPPPPP 896
           PP PP  P      P PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 849 PPXPPXXPPXPPPPPPXXXA 908
           PP  P     PPPPPP   A
Sbjct: 752 PPPAPIMGGPPPPPPPPGVA 771


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 849 PPXPPXXPPXPPPPPP 896
           PP P   PP  PPPPP
Sbjct: 13  PPPPGFEPPSQPPPPP 28



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
 Frame = +3

Query: 858 PPXXPPXPPPPP---PXXXAXPP 917
           PP  PP PPPPP   P     PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 17/58 (29%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
 Frame = +3

Query: 750 PPPPLXPRPXHXAXXXXXXXXXXXXXXXXXXXXPPX--PPXXPPXPPPPPPXXXAXPP 917
           PPPP  P     A                    PP   P    P P PPPP     PP
Sbjct: 191 PPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 870 PPXPPPPPP 896
           PP PPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 24.2 bits (50), Expect(2) = 2.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 858 PPXXPPXPPPPPP 896
           P    P PPPPPP
Sbjct: 184 PSDYNPPPPPPPP 196



 Score = 21.4 bits (43), Expect(2) = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 879 PPPPPPXXXA 908
           PPPPPP   A
Sbjct: 189 PPPPPPPPPA 198


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 861 PXXPPXPPPPPPXXXA 908
           P  PP PPPPPP   A
Sbjct: 942 PAFPPPPPPPPPLVSA 957



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/47 (27%), Positives = 14/47 (29%)
 Frame = +3

Query: 753  PPPLXPRPXHXAXXXXXXXXXXXXXXXXXXXXPPXPPXXPPXPPPPP 893
            PPP  P P   +                       P   PP PPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 849  PPXPPXXPPXPPPPPPXXXAXPP 917
            PP PP   P PPP  P   A PP
Sbjct: 1707 PPPPPMSVP-PPPSAPPMPAGPP 1728



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 849  PPXPPXXPPXPPPPPPXXXA 908
            PP P   P  PPPP P   A
Sbjct: 1721 PPMPAGPPSAPPPPLPASSA 1740


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 849 PPXPPXXPPXPPPPPPXXXAXPP 917
           PP P   PP P   PP   + PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPP 173



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 849 PPXPPXXPPXPPPPPPXXXAXPP 917
           PP P   PP P   PP     PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPP 166


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 849 PPXPPXXPPXPPPPPPXXXA 908
           PP PP  P  PP P P   A
Sbjct: 467 PPLPPAAPAPPPAPAPAPAA 486



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 852 PXPPXXPPXPPPPPP 896
           P PP     PPPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
 Frame = +3

Query: 849 PPXPPXXPPXP------PPPPPXXXAXPP 917
           PP  P  PP P      PP PP   A PP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 155 GSTAHNH-YANDGDKYYFCKIHF 90
           G ++H + + ND  ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 870 PPXPPPPPP 896
           PP PPPPPP
Sbjct: 306 PPPPPPPPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,229
Number of Sequences: 5004
Number of extensions: 37714
Number of successful extensions: 263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)