Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F09
         (985 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    30   0.44 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.58 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.9  
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    27   5.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    27   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.1  
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    26   7.1  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   7.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   9.4  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +3

Query: 267 AFAFGF-VVLGXAMAFGPTSGAHMNPAVTLA 356
           +FA+GF  +LG  +A G  SG H+NPAVT++
Sbjct: 348 SFAWGFGCMLGVYIA-GGISGGHVNPAVTIS 377


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 584 PXVPPXPPXPPPXPXPXP 637
           P +PP  P PPP P P P
Sbjct: 467 PPLPPAAPAPPPAPAPAP 484


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect(2) = 4.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 593 PPXPPXPPP 619
           PP PP PPP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 4.9
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 596 PXPPXPPPXPXP 631
           P PP PPP   P
Sbjct: 236 PAPPPPPPPTLP 247


>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 215 DAEPHRGTAVASSSETSARHHRRTQPDKPRGVSSSVEGM 99
           D  PHR  +  S ++  + H +R     P G SS  E +
Sbjct: 91  DTIPHRVVSAGSPNKEPSLHTKRPSESSPSGASSRRESV 129


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 97  HMPSTDEDTPRGLSGWV 147
           + P   +DTP+GLS W+
Sbjct: 565 YAPQASDDTPKGLSKWI 581


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 846  PPPPXXPXSPXPRXTSXPXXXPSDRXPP 929
            PPPP     P P     P   PS   PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 200 RGTAVASSSETSARHHRRTQPDKP---RGVSSSV 108
           R TA+ASSS T+A    R Q   P   R  SSSV
Sbjct: 271 RATAIASSSNTAASFRNRQQISHPPLGRTSSSSV 304


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 124 PRGLSGWVRRWWRALVSELLATAVPRCGSASAPWCRTKGRR 246
           P    GW+ RW  AL S+  A    +C  +   W  T   R
Sbjct: 213 PSNNEGWLIRWGNALESQDDALECLKCFKSCLSWVATDSIR 253


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 581 LPXVPPXPPXPPP 619
           +P  PP PP PPP
Sbjct: 941 MPAFPPPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,925,959
Number of Sequences: 5004
Number of extensions: 27808
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)