Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F08
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   2.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.5  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 705 RQXKKNENLNFLNIHSNKTYNVKLKDELYKNI*FI 601
           ++ K   +L+   IH+N  YN     +LY NI +I
Sbjct: 299 KEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYI 333


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 693 KNENLNFLNIHSNKTYNVKLKDELYKN 613
           K  N N  N ++N  YN   K   YKN
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKN 349


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 89  NSNTISFDANAKNDEIL 39
           N+ TI+ D   +NDE+L
Sbjct: 90  NNATINIDVTLQNDEVL 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,567
Number of Sequences: 438
Number of extensions: 3680
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)