Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_F07
(944 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.044
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.95
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 6.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.044
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 425 LQSSPTXXPLXTPPTXXPXSPPXXPXPPXSXSPPPXXPP 541
L+S P P PT P P P P PPP PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 29.9 bits (64), Expect = 0.55
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Frame = +2
Query: 416 PXFLQSSPTXXPLXTPP-TXXPXSPPXXPXPPX---SXSPPPXXPP 541
P + +P P+ PP PP P PP + PPP PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.10
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 386 PSXCSXCSIMPXFLQSSPTXXPLXTPPTXXPXSPPXXPXPPXSXSPPPXXP 538
PS P S+P PL P PP P PP + +P P P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +2
Query: 431 SSPTXXPLXTPPTXXPXSPPXXP--XPPXSXSPPPXXPP 541
S + P+ TPP+ P +PP P PP P PP
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +2
Query: 386 PSXCSXCSIMPXFLQSSPTXXPLXTPPTXXPXSPPXXPXPPXSXSPPPXXPP 541
P+ S I P S P P P P PP P + S PP PP
Sbjct: 224 PTSTSAPPIPPSIPSSRP---PERVPSLSAPAPPPIPPPSNGTVSSPPNSPP 272
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +2
Query: 416 PXFLQSSPTXXPLXTPPTXXPXSPPXXPXPPXSXSPPP 529
P S+P P PP+ +P P PP + PP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 434 SPTXXPLXTPPTXXPXSPPXXPXPPXSXSP-PPXXP 538
+P P PP+ P +PP P + P PP P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 421 ISPIVPYQXPPXXPPNLXXSXPPXTPSXS 507
I P +P PP P+L PP P S
Sbjct: 232 IPPSIPSSRPPERVPSLSAPAPPPIPPPS 260
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/54 (27%), Positives = 17/54 (31%)
Frame = +3
Query: 426 SNRPLPXXPXXPPQPXXLXAPRXXLXLLXLXPPPPXXPXAXAXXXPXPRXXPRA 587
S P+P P PP P L P P P + P P P A
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAA 466
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Frame = +2
Query: 437 PTXXPLXTPPTXXPX--SPPXXPXPPXSXSPPPXXPP 541
P P P + P S P P PP S PPP PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +2
Query: 431 SSPTXXPLXTPPTXXPXSPPXXPXPPXSXSPPPXXPP 541
++P TPP PP PP PP PP
Sbjct: 1697 AAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 416 PXFLQSSPTXXPLXTPPTXXPXSPPXXPXPPXSXSPPPXXP 538
P +P P+ PP P +PP PP +PPP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPP--PSAPPMPAGPP--SAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.95
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 407 SIMPXFLQSSPTXXPLXTP--PTXXPXSPPXXPXPPXSXSP 523
S+ P ++P P P P+ P PP P PP S +P
Sbjct: 170 SLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +2
Query: 437 PTXXPLXTPPTXXPXSPPXXPXPPXSXSP-PPXXPP 541
P+ P P SPP P P + P PP PP
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 461 PPTXXPXSPPXXPXPPXSXSPPPXXPP 541
PPT P P PP PPP PP
Sbjct: 224 PPTYTPKQADPLPAPP--PPPPPTLPP 248
Score = 23.8 bits (49), Expect(2) = 6.0
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +2
Query: 437 PTXXPLXTPPTXXPXSPPXXPXPPXS 514
PT P P P PP PP S
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQS 250
Score = 20.6 bits (41), Expect(2) = 6.0
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +2
Query: 497 PXPPXSXSPPPXXP 538
P PP + S PP P
Sbjct: 273 PPPPATPSQPPRPP 286
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 461 PPTXXPXSPPXXPXPPXSXSPPPXXP 538
PP P PP P S PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 476 PXSPPXXPXPPXSXSPPP 529
P SPP P P SPPP
Sbjct: 213 PESPPEKPIPSFVLSPPP 230
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 437 PTXXPLXTPPTXXPXSPPXXPXPPXSXSPPPXXP 538
P P PP P S P PP S +PP P
Sbjct: 1190 PVPPPSEAPPVPKP-SVGVPPVPPPSTAPPVPTP 1222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,757
Number of Sequences: 5004
Number of extensions: 25496
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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