Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_F02
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   1.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = +1

Query: 541 PPPPPRXXXXVXXPPPFXFXKKKXXXXGXGXGXXPXXPXXXXXGGXXXXXPPPPP 705
           PPPPP        P P           G      P  P     G      PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP----PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
 Frame = +2

Query: 347 PPPPGGXXP---PXXF*XXXGGXXXXXXTPPXPPPFFXXGGXPPP 472
           PPPP    P   P                PP PPP     G PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 673 PPXXXXXGEXGKXPPPXPPXP 611
           PP     G  G  PPP PP P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 540 PPPPPPXXXXGXXXPP 587
           PPPPPP    G   PP
Sbjct: 762 PPPPPPPGVAGAGPPP 777



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = +3

Query: 540 PPPPPPXXXXGXXXPPXFXXKKKXGXGGXGGGXXPXSPXXXXXGGXAXFXXPPPP 704
           PPPPPP        P               GG  P  P     G       PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP---PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 531 PXXPPPPPP 557
           P  PPPPPP
Sbjct: 6   PGNPPPPPP 14



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 540 PPPPPPXXXXGXXXPP 587
           PPPPPP        PP
Sbjct: 10  PPPPPPPGFEPPSQPP 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,175
Number of Sequences: 5004
Number of extensions: 29523
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)