Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_F01
(1012 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 40 6e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.021
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.048
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.20
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.45
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.60
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 9.7
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 39.9 bits (89), Expect = 6e-04
Identities = 24/64 (37%), Positives = 24/64 (37%)
Frame = -1
Query: 754 GGRGGXGGGXXGRAGAXGGXXXXXXXXXXXXGXXXAGGGXEXXXGGAGGXARXXGGGGGG 575
G RGG GG GR G GG GGG GG GG GG GG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGAR-----GGGRGGARGGRGGRGGARGGRGGS 60
Query: 574 GXGR 563
GR
Sbjct: 61 SGGR 64
Score = 35.1 bits (77), Expect = 0.016
Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = -1
Query: 754 GGRGGXGGGXXGRAGAXGGXXXXXXXXXXXXGXXXAGG--GXEXXXGGAGGXARXXGGGG 581
GGRGG GG G G GG GG G GG GG + GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Query: 580 GG 575
GG
Sbjct: 69 GG 70
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.7 bits (76), Expect = 0.021
Identities = 24/63 (38%), Positives = 24/63 (38%)
Frame = -1
Query: 754 GGRGGXGGGXXGRAGAXGGXXXXXXXXXXXXGXXXAGGGXEXXXGGAGGXARXXGGGGGG 575
GG GG GGG G G GG GGG GG GG GG GGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGF----------------GGGPGGFGGGLGGFGGGPGGFGGG 264
Query: 574 GXG 566
G
Sbjct: 265 PGG 267
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 646 GGGXEXXXGGAGGXARXXGG-GGGGGXG 566
GGG GG+GG GG GG GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG 214
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.048
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 615 APPXXXSXPPPAXXXXXXXXXXXXXXXXPPXAPALPXXPPPXPP-LPP 755
APP S PPPA PP AP+LP PP PP +PP
Sbjct: 164 APPIPSSLPPPAQPAAPVKS--------PPSAPSLPSAVPPMPPKVPP 203
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/46 (26%), Positives = 15/46 (32%)
Frame = +3
Query: 615 APPXXXSXPPPAXXXXXXXXXXXXXXXXPPXAPALPXXPPPXPPLP 752
APP + P P PP + P P PP+P
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.11
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 896 PPXXPPTPPXPXXXXPPHHPPXXXRP 973
PP PP PP P PP PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 609 PPAPPXXXSXPPPAXXXXXXXXXXXXXXXXPPXAPALPXXPPPXPPLPP 755
PP P P PA PP P + PP PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 639 PPPAXXXXXXXXXXXXXXXXPPXAPALPXXPPPXPP 746
PPP PP AP + PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +2
Query: 896 PPXXPPTPPXPXXXXPPHHPPXXXRPXSXLXPXXPXP 1006
P P PP P PP PP + P P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.45
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 609 PPAPPXXXSXPPPAXXXXXXXXXXXXXXXXPPXAPALPXXPPPXPPLPP 755
P APP PP+ P AP LP P PPLPP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSA--PIAPPLPAGMPAAPPLPP 471
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +3
Query: 609 PPAPPXXXSXPPPAXXXXXXXXXXXXXXXXPPXAPALPXXPPPXPPLP 752
P APP PP A PP APA P P P P P
Sbjct: 444 PAAPPL----PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.60
Identities = 15/29 (51%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 646 GGGXEXXXGGAGGXARXXGGGG-GGGXGR 563
GGG GG GG G GG GGG GR
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGR 474
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -1
Query: 754 GGRGGXGGG-XXGRAGAXGG 698
GGRGG GGG GR GA G
Sbjct: 463 GGRGGFGGGRGRGRGGARSG 482
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Frame = +3
Query: 699 PPXAPALPXXPP--PXPPLP 752
PP AP +P PP P PPLP
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = +2
Query: 896 PPXXPPTPPXPXXXXPP--HHPPXXXRPXSXLXPXXP 1000
P PTPP P PP PP P S P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +2
Query: 899 PXXPPTPPXPXXXXPPHHPP 958
P PPT PPHHPP
Sbjct: 161 PPFPPTQHHHPHTRPPHHPP 180
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 699 PPXAPALPXXPPPXPP-LPP 755
P A LP PPP PP LPP
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 708 APALPXXPPPXPPLPP 755
A +P PPP PP PP
Sbjct: 938 AGVMPAFPPPPPPPPP 953
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 711 PALPXXPPPXPPL 749
PA P PPP PPL
Sbjct: 942 PAFPPPPPPPPPL 954
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,024
Number of Sequences: 5004
Number of extensions: 12714
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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