Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP19_F_E23
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   124   2e-29
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.7  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  124 bits (298), Expect = 2e-29
 Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 1/181 (0%)
 Frame = +2

Query: 155 APNSRHLFLSAQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPA 334
           A +S +  ++   R   S L L EH    LSPA+ + + AAK+ GGDV   V G      
Sbjct: 12  ALSSSNFKINCGRRHWFSVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQI 71

Query: 335 AESIAKA-NGISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPR 511
           ++ +AK+ N + KV+  E+  ++    + +  ++    K+ + +H+ +  +  GK V+PR
Sbjct: 72  SQKVAKSVNDLKKVIYVENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPR 131

Query: 512 VAAKLDVSPITDIIGIKDANTFVRTXYAGXAILTLEAKDPIKVITVRGTAFPAXPLEGGS 691
           +AA  DV  I+DIIG+  A+TFVR  YAG   +T+  KDPIK++TVR +AF A P  G  
Sbjct: 132 LAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEG 191

Query: 692 A 694
           A
Sbjct: 192 A 192


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -2

Query: 344 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 228
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,909
Number of Sequences: 5004
Number of extensions: 56121
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)