Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP19_F_E23
(933 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 115 5e-26
03_02_0993 - 13058785-13059025,13059188-13059264,13062157-130623... 38 0.009
12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004 29 5.3
10_08_0818 + 20801061-20801298,20801409-20801509,20801600-208018... 29 5.3
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895... 29 5.3
12_01_0692 - 5914435-5914656 28 9.2
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 28 9.2
02_05_1275 - 35395228-35395642,35396682-35397250 28 9.2
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 115 bits (277), Expect = 5e-26
Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Frame = +2
Query: 191 LRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGD---VSVLVAGTKCG--PAAESIAKA 355
L R STLV+AEH + P++ + L AA+ IG D VS+L+ G+ G AAE A +
Sbjct: 27 LPRPVSTLVVAEHEGGFVKPSSLSALAAAEAIGKDDNRVSLLLGGSGPGLHKAAEHAASS 86
Query: 356 NG-ISKVLVAESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDV 532
+ +S+VLVA+SDVF AE L+ + Q + ++H++A +T+FGK +LPR AA LDV
Sbjct: 87 HPLVSEVLVADSDVFAHPLAEPWAELLRSVQHKGGYSHVIASSTSFGKNLLPRAAALLDV 146
Query: 533 SPITDIIGIKDANTFVRTXYAGXAILTLE--AKDPIKVITVRGTAF 664
SP+TD+ I + FVR YAG A+ T+ +DP ++++R T+F
Sbjct: 147 SPVTDVTSISEPRVFVRPIYAGNALCTVRYTGEDPC-MMSIRSTSF 191
>03_02_0993 -
13058785-13059025,13059188-13059264,13062157-13062351,
13062650-13062811,13062915-13063044,13063082-13063149,
13063244-13063291,13063383-13063448,13063739-13063818,
13064644-13064737
Length = 386
Score = 38.3 bits (85), Expect = 0.009
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 221 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 343
+ +NN +L PA N ++ A+K+ GD+S++V G G A S
Sbjct: 169 SSYNNTLLRPAIANAVHKARKLYGDISIIVTGHSMGGALAS 209
>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
Length = 266
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 242 LSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 343
L P T LNAA + G + G+ C P A S
Sbjct: 121 LDPLTHRPLNAAAAVAGHHHLAAGGSSCSPDATS 154
>10_08_0818 +
20801061-20801298,20801409-20801509,20801600-20801817,
20802461-20802824
Length = 306
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 326 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 237
H+WF P A HH W L++ VP
Sbjct: 164 HLWFDPTAGFHHYAILWNPDQILFLVDDVP 193
>07_03_1621 +
28187846-28187915,28189214-28189293,28189485-28189550,
28189801-28189848,28189967-28190034,28190107-28190179,
28190284-28190445,28190620-28190814,28191114-28191190,
28191280-28191481
Length = 346
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 221 AEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAES 343
+ +NN +L A + ++ A++ GD++V+V G G A S
Sbjct: 142 SSYNNTILRLAITSAVHKARQSYGDINVIVTGHSMGGAMAS 182
>12_01_0692 - 5914435-5914656
Length = 73
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 840 PSXVVXXHPHXXNXXPGCPPXP 905
P V+ HP N P CPP P
Sbjct: 52 PDCVIRDHPAGENGIPPCPPRP 73
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 28.3 bits (60), Expect = 9.2
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 185 AQLRRLQSTLVLAEHNNEVLSPATQNTLNAAKKIGGDVS-VLVAGTKCGPAAESIAKANG 361
AQL +++ + H LSP + + G + S VLVA K G E I+ +
Sbjct: 100 AQLEKIRDE---SRHQQTELSPDNMTDIPYTEGGGKNGSWVLVACDKPGANMEEISGIDN 156
Query: 362 ISKVLVAESDVFKGFTA 412
+ VLV + D+ G T+
Sbjct: 157 ENYVLVNDDDIIDGMTS 173
>02_05_1275 - 35395228-35395642,35396682-35397250
Length = 327
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 326 HIWFQPQALRHHLQFSWQHSMYFGLLEIVP 237
H+WF P A HH W L++ VP
Sbjct: 168 HLWFDPTADFHHYAILWTSDHIIFLVDDVP 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,241,135
Number of Sequences: 37544
Number of extensions: 393167
Number of successful extensions: 1404
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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